Overview | Risk assessment | Simulation | Transmission network
Package: ZooRisk 1.0.0
Vinodhkumar Obli Rajendran
ZooRisk: Quantitative Assessment of Zoonotic Disease Risk
Provides quantitative tools for assessing zoonotic disease risk across animal, human, environmental, and transmission interfaces. The package supports exposure and transmission risk estimation, spillover risk assessment, risk scoring, cross-species comparison, transmission-network analysis, Monte Carlo uncertainty simulation, and sensitivity analysis. The One Health framework underlying these assessments is described by World Health Organization, Food and Agriculture Organization of the United Nations, United Nations Environment Programme, and World Organisation for Animal Health (2022) <doi:10.4060/cc2289en>.
Authors:
ZooRisk_1.0.0.tar.gz
ZooRisk_1.0.0.zip(r-4.7-any)ZooRisk_1.0.0.zip(r-4.6-any)
ZooRisk_1.0.0.tar.gz(r-4.7-any)ZooRisk_1.0.0.tar.gz(r-4.6-any)
ZooRisk_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ZooRisk/json (API)
| # Install 'ZooRisk' in R: |
| install.packages('ZooRisk', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/vinodhpmd/zoorisk/issues
Last updated from:169ffbc69e. Checks:6 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 122 | ||
| source / vignettes | OK | 200 | ||
| linux-release | OK | 115 | ||
| windows-devel | OK | 82 | ||
| windows-release | OK | 69 | ||
| wasm-release | OK | 131 |
Exports:cross_speciesexposure_riskhost_riskmonte_carlo_risknetwork_centralitynetwork_riskonehealth_summaryplot_networkplot_riskplot_risk_matrixrisk_contributionrisk_matrixrisk_rankrisk_scorerisk_simulatesensitivity_riskspillover_risktransmission_networktransmission_riskzoonotic_risk
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compare risk across host species | cross_species |
| Exposure risk | exposure_risk |
| Calculate host-specific risk | host_risk |
| Summarize Monte Carlo risk | monte_carlo_risk |
| Calculate transmission network centrality | network_centrality |
| Summarize transmission network connectivity | network_risk |
| Summarize One Health risk components | onehealth_summary |
| Plot a transmission network | plot_network |
| Plot a zoonotic risk score | plot_risk |
| Plot a two-dimensional risk matrix | plot_risk_matrix |
| Print a ZooRisk result | print.zoorisk |
| Calculate component contributions | risk_contribution |
| Classify risk into qualitative categories | risk_matrix |
| Rank zoonotic risks | risk_rank |
| Calculate a weighted zoonotic risk score | risk_score |
| Simulate zoonotic risk under uncertainty | risk_simulate |
| One-at-a-time sensitivity analysis | sensitivity_risk |
| Spillover risk | spillover_risk |
| Summarize a ZooRisk result | summary.zoorisk |
| Construct a transmission network | transmission_network |
| Transmission risk | transmission_risk |
| Quantitative zoonotic disease risk | zoonotic_risk |