Package: ZVCV 2.1.3
ZVCV: Zero-Variance Control Variates
Stein control variates can be used to improve Monte Carlo estimates of expectations when the derivatives of the log target are available. This package implements a variety of such methods, including zero-variance control variates (ZV-CV, Mira et al. (2013) <doi:10.1007/s11222-012-9344-6>), regularised ZV-CV (South et al., 2023 <doi:10.1214/22-BA1328>), control functionals (CF, Oates et al. (2017) <doi:10.1111/rssb.12185>) and semi-exact control functionals (SECF, South et al., 2022 <doi:10.1093/biomet/asab036>). ZV-CV is a parametric approach that is exact for (low order) polynomial integrands with Gaussian targets. CF is a non-parametric alternative that offers better than the standard Monte Carlo convergence rates. SECF has both a parametric and a non-parametric component and it offers the advantages of both for an additional computational cost. Functions for applying ZV-CV and CF to two estimators for the normalising constant of the posterior distribution in Bayesian statistics are also supplied in this package. The basic requirements for using the package are a set of samples, derivatives and function evaluations.
Authors:
ZVCV_2.1.3.tar.gz
ZVCV_2.1.3.tar.gz(r-4.7-arm64)ZVCV_2.1.3.tar.gz(r-4.7-x86_64)ZVCV_2.1.3.tar.gz(r-4.6-arm64)ZVCV_2.1.3.tar.gz(r-4.6-x86_64)
ZVCV_2.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ZVCV/json (API)
NEWS
| # Install 'ZVCV' in R: |
| install.packages('ZVCV', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/leahprice/zvcv/issues
- VDP - Example of estimation using SMC
Last updated from:8a6dc80b28. Checks:6 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 193 | ||
| linux-devel-x86_64 | OK | 191 | ||
| source / vignettes | OK | 230 | ||
| linux-release-arm64 | OK | 172 | ||
| linux-release-x86_64 | OK | 198 | ||
| wasm-release | OK | 153 |
Exports:aSECFaSECF_crossvalCFCF_crossvalevidence_CTIevidence_CTI_CFevidence_SMCevidence_SMC_CFExpand_TemperaturesgetXK0_fnlogsumexpmedianTunenearPDPhi_fnSECFSECF_crossvalsquareNormzvcv
Dependencies:abindBHclicodetoolsdplyrforeachgenericsglmnetglueiteratorslatticelifecyclemagrittrMatrixmvtnormpillarpkgconfigR6rbibutilsRcppRcppArmadilloRcppEigenRdpackrlangRlinsolveshapesurvivaltibbletidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Approximate semi-exact control functionals (aSECF) | aSECF |
| Approximate semi-exact control functionals (aSECF) with cross-validation | aSECF_crossval |
| Control functionals (CF) | CF |
| Control functionals (CF) with cross-validation | CF_crossval |
| Evidence estimation with ZV-CV | evidence evidence_CTI evidence_CTI_CF evidence_SMC evidence_SMC_CF |
| Adjusting the temperature schedule | Expand_Temperatures |
| ZV-CV design matrix | getX |
| Kernel matrix calculation | K0_fn |
| Stable log sum of exponential calculations | logsumexp |
| Median heuristic | medianTune |
| Nearest symmetric positive definite matrix | nearPD |
| Phi matrix calculation | Phi_fn |
| Semi-exact control functionals (SECF) | SECF |
| Semi-exact control functionals (SECF) with cross-validation | SECF_crossval |
| Squared norm matrix calculation | squareNorm |
| Example of estimation using SMC | VDP |
| ZV-CV for general expectations | zvcv |
| Zero-Variance Control Variates | ZVCV-package ZVCV ZVCV_package |
