Package: XDNUTS 1.5

Paolo Manildo

XDNUTS: Discontinuous Hamiltonian Monte Carlo with Varying Trajectory Length

Hamiltonian Monte Carlo for both continuous and discontinuous posterior distributions with customisable trajectory length termination criterion. See Nishimura et al. (2020) <doi:10.1093/biomet/asz083> for the original Discontinuous Hamiltonian Monte Carlo, Hoffman et al. (2014) <doi:10.48550/arXiv.1111.4246> and Betancourt (2016) <doi:10.48550/arXiv.1601.00225> for the definition of possible Hamiltonian Monte Carlo termination criteria.

Authors:Paolo Manildo [aut, cre]

XDNUTS_1.5.tar.gz
XDNUTS_1.5.tar.gz(r-4.5-noble)XDNUTS_1.5.tar.gz(r-4.4-noble)
XDNUTS_1.5.tgz(r-4.4-emscripten)XDNUTS_1.5.tgz(r-4.3-emscripten)
XDNUTS.pdf |XDNUTS.html✨
XDNUTS/json (API)

# Install 'XDNUTS' in R:

install.packages('XDNUTS', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3
openmp– GCC OpenMP (GOMP) support library

Datasets:

viscosity - Blood viscosity data

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.30 score 2 scripts 119 downloads 9 exports 35 dependencies

Last updated 24 days agofrom:47e5dec9ad. Checks:OK: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 29 2024
R-4.5-linux-x86_64	OK	Oct 29 2024

Exports:main_function plot.XDNUTS print.summary.XDNUTS print.XDNUTS set_parameters summary.XDNUTS xdextract xdnuts xdtransform

Dependencies:cli coda colorspace fansi farver ggplot2 glue gridExtra gtable isoband labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig purrr R6 rbibutils RColorBrewer Rcpp RcppArmadillo Rdpack rlang scales tibble utf8 vctrs viridisLite withr

Tutorial for main functions

Rendered fromTutorial_for_main_functions.Rmdusingknitr::rmarkdownon Oct 29 2024.

Last update: 2024-10-28
Started: 2024-10-28

Help page	Topics
Discontinuous Hamiltonian Monte Carlo with Varying Trajectory Length	XDNUTS-package XDNUTS
Function to generate a Markov chain for both continuous and discontinuous posterior distributions.	main_function
Function to view the draws from the posterior distribution.	plot.XDNUTS
Function for printing an object of class summary.XDNUTS	print.summary.XDNUTS
Function for printing an object of class XDNUTS	print.XDNUTS
Function that regulates the specifications of the xdnuts function.	set_parameters
Function to print the summary of an XDNUTS model.	summary.XDNUTS
Blood viscosity data	viscosity
Function to extract samples from the output of an XDNUTS model.	xdextract
Discontinuous Hamiltonian Monte Carlo using both manual and automatic termination criteria.	xdnuts
Function to apply a transformation to the samples from the output of an XDNUTS model.	xdtransform

Package: XDNUTS 1.5

XDNUTS: Discontinuous Hamiltonian Monte Carlo with Varying Trajectory Length

Tutorial for main functions

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)