Package: VAM 1.1.0

H. Robert Frost

VAM: Variance-Adjusted Mahalanobis

Contains logic for cell-specific gene set scoring of single cell RNA sequencing data.

Authors:H. Robert Frost

VAM_1.1.0.tar.gz
VAM_1.1.0.tar.gz(r-4.5-noble)VAM_1.1.0.tar.gz(r-4.4-noble)
VAM_1.1.0.tgz(r-4.4-emscripten)VAM_1.1.0.tgz(r-4.3-emscripten)
VAM.pdf |VAM.html✨
VAM/json (API)
NEWS

# Install 'VAM' in R:
install.packages('VAM', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

4.98 score 4 packages 16 scripts 480 downloads 23 mentions 4 exports 3 dependencies

Last updated 1 years agofrom:9921c5a7cd. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 29 2024
R-4.5-linuxOKNov 29 2024

Exports:createGeneSetCollectionvamvamForCollectionvamForSeurat

Dependencies:latticeMASSMatrix

10x PBMC 3k log normalization example

Rendered fromVAM_PBMC3K_LogNormalization.Rnwusingutils::Sweaveon Nov 29 2024.

Last update: 2021-02-01
Started: 2021-02-01

10x PBMC 3k log normalization Hallmark collection example

Rendered fromVAM_PBMC3K_Hallmark_LogNormalization.Rnwusingutils::Sweaveon Nov 29 2024.

Last update: 2021-02-01
Started: 2021-02-01

10x PBMC 3k SCTransform example

Rendered fromVAM_PBMC3K_SCTransform.Rnwusingutils::Sweaveon Nov 29 2024.

Last update: 2021-02-01
Started: 2021-02-01

Seurat pbmc_small log normalization example

Rendered fromVAM_pbmc_small.Rnwusingutils::Sweaveon Nov 29 2024.

Last update: 2023-11-05
Started: 2021-01-14

Seurat pbmc_small SCTransform example

Rendered fromVAM_pbmc_small_sctransform.Rnwusingutils::Sweaveon Nov 29 2024.

Last update: 2023-11-05
Started: 2021-02-09