This package is considered a duplicate. The official version of this package is found at:https://boennecd.r-universe.dev/VAJointSurv

Package: VAJointSurv 0.1.1

Benjamin Christoffersen

VAJointSurv: Variational Approximation for Joint Survival and Marker Models

Estimates joint marker (longitudinal) and survival (time-to-event) outcomes using variational approximations. The package supports multivariate markers allowing for correlated error terms and multiple types of survival outcomes which may be left-truncated, right-censored, and recurrent. Time-varying fixed and random covariate effects are supported along with non-proportional hazards.

Authors:Benjamin Christoffersen [cre, aut], Mark Clements [aut], Birzhan Akynkozhayev [aut], Antoine Savine [cph]

VAJointSurv_0.1.1.tar.gz
VAJointSurv_0.1.1.tar.gz(r-4.5-noble)VAJointSurv_0.1.1.tar.gz(r-4.4-noble)
VAJointSurv_0.1.1.tgz(r-4.4-emscripten)VAJointSurv_0.1.1.tgz(r-4.3-emscripten)
VAJointSurv.pdf |VAJointSurv.html✨
VAJointSurv/json (API)

# Install 'VAJointSurv' in R:

install.packages('VAJointSurv', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/boennecd/vajointsurv/issues

Uses libs:

openblas– Optimized BLAS
c++– GNU Standard C++ Library v3
openmp– GCC OpenMP (GOMP) support library

openblas cpp openmp

2.32 score 21 scripts 48 downloads 19 exports 41 dependencies

Last updated 17 days agofrom:ccd1c4fd37. Checks:2 OK. Indexed: no.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 16 2025
R-4.5-linux-x86_64	OK	Jan 16 2025

Exports:bs_term joint_ms_format joint_ms_hess joint_ms_lb joint_ms_lb_gr joint_ms_opt joint_ms_profile joint_ms_ptr joint_ms_set_vcov joint_ms_start_val joint_ms_va_par marker_term ns_term plot_marker plot_surv poly_term stacked_term surv_term weighted_term

Dependencies:boot brio callr cli crayon desc diffobj digest evaluate fs glue jsonlite lattice lifecycle lme4 magrittr MASS Matrix minqa nlme nloptr pkgbuild pkgload praise processx ps psqn R6 rbibutils Rcpp RcppArmadillo RcppEigen Rdpack reformulas rlang rprojroot SimSurvNMarker survival testthat waldo withr

Joint Survival and Marker Models

Rendered fromVAJointSurv.html.asisusingR.rsp::asison Jan 16 2025.

Last update: 2022-08-14
Started: 2022-08-14

Citation

Readme and manuals

Help Manual

Help page	Topics
Term for a B-Spline Basis for Polynomial Splines	bs_term
Formats the Parameter Vector	joint_ms_format
Computes the Hessian	joint_ms_hess
Evaluates the Lower Bound or the Gradient of the Lower Bound	joint_ms_lb joint_ms_lb_gr
Optimizes the Lower Bound	joint_ms_opt
Approximate Likelihood Ratio based Confidence Intervals	joint_ms_profile
Creates a joint_ms Object to Estimate a Joint Survival and Marker Model	joint_ms_ptr
Sets the Covariance Parameters	joint_ms_set_vcov
Quick Heuristic for the Starting Values	joint_ms_start_val
Extracts the Variational Parameters	joint_ms_va_par
Creates Data for One Type of Marker	marker_term
Term for a Basis Matrix for Natural Cubic Splines	ns_term
Plots a Markers Mean Curve with Pointwise Quantiles	plot_marker
Plots Quantiles of the Conditional Hazards	plot_surv
Term for Orthogonal Polynomials	poly_term
Term for a Basis Matrix for of Different Types of Terms	stacked_term
Creates Data for One Type of Survival Outcome	surv_term
Expansions in the VAJointSurv package	VAJointSurv-terms
Term for a Basis Matrix for Weighted Term	weighted_term