Package: TPACData 0.1.0

H. Robert Frost

TPACData: Human Protein Atlas Data for Tissue-Adjusted Pathway Analysis of Cancer (TPAC)

Contains summary data on gene expression in normal human tissues from the Human Protein Atlas for use with the Tissue-Adjusted Pathway Analysis of cancer (TPAC) method. Frost, H. Robert (2023) "Tissue-adjusted pathway analysis of cancer (TPAC)" <doi:10.1101/2022.03.17.484779>.

Authors:H. Robert Frost [aut, cre]

TPACData_0.1.0.tar.gz
TPACData_0.1.0.tar.gz(r-4.5-noble)TPACData_0.1.0.tar.gz(r-4.4-noble)
TPACData_0.1.0.tgz(r-4.4-emscripten)TPACData_0.1.0.tgz(r-4.3-emscripten)
TPACData.pdf |TPACData.html
TPACData/json (API)
NEWS

# Install 'TPACData' in R:
install.packages('TPACData', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • hpa.data - Gene expression data for normal human tissues from the Human Protein Atlas (HPA). This data was specially processed by the HPA group as FPKM values (file "HPA.normal.FPKM.GDCpipeline.csv") using a pipeline similar to that employed by GDC for the TCGA RNA-seq data.

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.48 score 1 packages 232 downloads 0 exports 1 dependencies

Last updated 1 years agofrom:bb757506fb. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 18 2024
R-4.5-linuxOKOct 18 2024

Exports:

Dependencies:data.table