Package: TPACData 0.1.0
H. Robert Frost
TPACData: Human Protein Atlas Data for Tissue-Adjusted Pathway Analysis of Cancer (TPAC)
Contains summary data on gene expression in normal human tissues from the Human Protein Atlas for use with the Tissue-Adjusted Pathway Analysis of cancer (TPAC) method. Frost, H. Robert (2023) "Tissue-adjusted pathway analysis of cancer (TPAC)" <doi:10.1101/2022.03.17.484779>.
Authors:
TPACData_0.1.0.tar.gz
TPACData_0.1.0.tar.gz(r-4.5-noble)TPACData_0.1.0.tar.gz(r-4.4-noble)
TPACData_0.1.0.tgz(r-4.4-emscripten)TPACData_0.1.0.tgz(r-4.3-emscripten)
TPACData.pdf |TPACData.html✨
TPACData/json (API)
NEWS
| # Install 'TPACData' in R: |
| install.packages('TPACData', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- hpa.data - Gene expression data for normal human tissues from the Human Protein Atlas (HPA). This data was specially processed by the HPA group as FPKM values (file "HPA.normal.FPKM.GDCpipeline.csv") using a pipeline similar to that employed by GDC for the TCGA RNA-seq data.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 1 years agofrom:bb757506fb. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 17 2024 |
| R-4.5-linux | OK | Dec 17 2024 |
Exports:
Dependencies:data.table
