Package: SmartSVA 0.1.3
Jun Chen
SmartSVA: Fast and Robust Surrogate Variable Analysis
Introduces a fast and efficient Surrogate Variable Analysis algorithm that captures variation of unknown sources (batch effects) for high-dimensional data sets. The algorithm is built on the 'irwsva.build' function of the 'sva' package and proposes a revision on it that achieves an order of magnitude faster running time while trading no accuracy loss in return.
Authors:
SmartSVA_0.1.3.tar.gz
SmartSVA_0.1.3.tar.gz(r-4.5-noble)SmartSVA_0.1.3.tar.gz(r-4.4-noble)
SmartSVA_0.1.3.tgz(r-4.4-emscripten)SmartSVA_0.1.3.tgz(r-4.3-emscripten)
SmartSVA.pdf |SmartSVA.html✨
SmartSVA/json (API)
# Install 'SmartSVA' in R: |
install.packages('SmartSVA', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:f191d02cbb. Checks:OK: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 20 2024 |
R-4.5-linux-x86_64 | OK | Nov 20 2024 |
Exports:smartsva.cpp
Dependencies:annotateAnnotationDbiaskpassBHBiobaseBiocGenericsBiocParallelBiostringsbitbit64blobcachemcliclueclustercodetoolscolorspacecpp11crayoncurlDBIedgeRfansifarverfastICAfastmapformatRfutile.loggerfutile.optionsgenefiltergenericsGenomeInfoDbGenomeInfoDbDataggplot2gluegtablehttrIRangesisobandisvaJADEjsonliteKEGGRESTlabelinglambda.rlatticelifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrplyrpngqvalueR6RColorBrewerRcppRcppEigenreshape2rlangRSpectraRSQLiteS4VectorsscalessnowstatmodstringistringrsurvivalsvasystibbleUCSC.utilsutf8vctrsviridisLitewithrXMLxtableXVectorzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
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Fast and robust surrogate variable analysis. | smartsva.cpp |