Package: SigBridgeRUtils 0.2.7

Yuxi Yang

SigBridgeRUtils: Some Utilities & Base Supports for 'SigBridgeR'

Provides fundamental function support for 'SigBridgeR' and its single-cell phenotypic screening algorithm, including optional functions.

Authors:Yuxi Yang [cre, aut]

SigBridgeRUtils_0.2.7.tar.gz
SigBridgeRUtils_0.2.7.zip(r-4.7-x86_64)SigBridgeRUtils_0.2.7.zip(r-4.7-arm64)SigBridgeRUtils_0.2.7.zip(r-4.6-x86_64)SigBridgeRUtils_0.2.7.zip(r-4.6-arm64)
SigBridgeRUtils_0.2.7.tar.gz(r-4.7-arm64)SigBridgeRUtils_0.2.7.tar.gz(r-4.7-x86_64)SigBridgeRUtils_0.2.7.tar.gz(r-4.6-arm64)SigBridgeRUtils_0.2.7.tar.gz(r-4.6-x86_64)
SigBridgeRUtils_0.2.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SigBridgeRUtils/json (API)

# Install 'SigBridgeRUtils' in R:
install.packages('SigBridgeRUtils', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/wanglabcsu/sigbridgerutils/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

openblascppopenmp

2.00 score 783 downloads 36 exports 37 dependencies

Last updated from:a8b7b0c2ea. Checks:10 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK162
linux-devel-x86_64OK156
source / vignettesOK200
linux-release-arm64OK162
linux-release-x86_64OK165
windows-devel-arm64OK250
windows-devel-x86_64OK185
windows-release-arm64OK245
windows-release-x86_64OK110
wasm-releaseOK132

Exports:%<-%AddCaller2cliAddMiscAddTimeStamp2cliall_identicalCol2RownamescolMeans3colMedians3colQuantiles3colSds3colSums3colVars3CreateCallerCliEnvCreateTimeStampCliEnvdetect_gpuFilterArgs4FuncGetCallerInfoGetFuncArgsgetFuncOptionGetPythonPathginv2ginv2_defaultListPyEnvMatchArgMatchFunc2Argsnormalize.quantilesrowMaxs3rowMeans3rowMedians3Rownames2ColrowSds3rowSums3rowVars3setFuncOptionSetupPyEnvTimeStamp

Dependencies:abindassortheadbeachmatBiocGenericschkclidata.tableDelayedArraygenericsgluehereIRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatspngprocessxpspurrrR6rappdirsRcppRcppArmadilloRcppTOMLreticulaterlangrprojrootS4ArraysS4VectorsSparseArrayvctrswithrXVector

Readme and manuals

Help Manual

Help pageTopics
Unpack values into multiple variables%<-%
A Decorator for Adding Caller Info to CLI FunctionsAddCaller2cli
Safely Add Miscellaneous Data to Seurat ObjectAddMisc
A Decorator for Adding Timestamp to CLI FunctionsAddTimeStamp2cli
Check all the Objects Are Identicalall_identical
Create Environment with Caller-Aware CLI FunctionsCreateCallerCliEnv
Create Environment with Timestamped CLI FunctionsCreateTimeStampCliEnv
Detect available GPU devicesdetect_gpu
Keep Wanted Arguments According to A Function from DotsFilterArgs4Func
Get Caller NameGetCallerInfo
Get Function Arguments from Calling ContextGetFuncArgs
Get Python Executable PathGetPythonPath
Generalized Inverse (Moore-Penrose Inverse)ginv2 ginv2_beachmat ginv2_default
List Available Python EnvironmentsListPyEnv ListPyEnv.conda ListPyEnv.default ListPyEnv.venv
Argument Matching with Default FallbackMatchArg
Match Functions to Argument ListMatchFunc2Args
Matrix Statistics FunctionscolMeans3 colMedians3 colQuantiles3 colSds3 colSums3 colVars3 matrix-stats normalize.quantiles rowMaxs3 rowMeans3 rowMedians3 rowSds3 rowSums3 rowVars3
Row Name UtilitiesCol2Rownames rowname-utils Rownames2Col
Create or Use Python Environment with Required PackagesSetupPyEnv SetupPyEnv.default
Setup Conda Python EnvironmentSetupPyEnv.conda
Setup Virtual Environment (venv)SetupPyEnv.venv
Configuration Functions for SigBridgeR PackagecheckFuncOption getFuncOption setFuncOption SigBridgeR_Function_Setting
Generate Timestamp StringTimeStamp