Package: SegCorr 1.2
Eleni Ioanna Delatola
SegCorr: Detecting Correlated Genomic Regions
Performs correlation matrix segmentation and applies a test procedure to detect highly correlated regions in gene expression.
Authors:
SegCorr_1.2.tar.gz
SegCorr_1.2.tar.gz(r-4.5-noble)SegCorr_1.2.tar.gz(r-4.4-noble)
SegCorr_1.2.tgz(r-4.4-emscripten)SegCorr_1.2.tgz(r-4.3-emscripten)
SegCorr.pdf |SegCorr.html✨
SegCorr/json (API)
| # Install 'SegCorr' in R: |
| install.packages('SegCorr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:26d6def2ad. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 01 2024 |
| R-4.5-linux | OK | Sep 01 2024 |
Exports:CNV_correctionSegCorrsegmentationsegmented_signal
Dependencies:acnrDNAcopyjointsegmatrixStats
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Detecting Correlated Genomic Regions | SegCorr-package |
| Corrects Gene Expression for CNV | CNV_correction |
| Simulated Gene Expression | EXP_raw |
| Performs CNV Correction and Correlation Matrix Segmentation | SegCorr |
| Correlation Matrix Segmentation | segmentation |
| Mean Segmentation | segmented_signal |
| Simulated SNP signal | SNP |