Package: SVEMnet 1.0.3
SVEMnet: Self-Validated Ensemble Models with Elastic Net Regression
Implements Self-Validated Ensemble Models (SVEM, Lemkus et al. (2021) <doi:10.1016/j.chemolab.2021.104439>) using Elastic Net regression via 'glmnet' (Friedman et al. <doi:10.18637/jss.v033.i01>). SVEM averages predictions from multiple models fitted to fractionally weighted bootstraps of the data, tuned with anti-correlated validation weights. Also implements the randomized permutation whole model test for SVEM (Karl (2024) <doi:10.1016/j.chemolab.2024.105122>). Code for the whole model test was taken from the supplementary material of Karl (2024). Development of this package was assisted by 'GPT o1-preview' for code structure and documentation.
Authors:
SVEMnet_1.0.3.tar.gz
SVEMnet_1.0.3.tar.gz(r-4.5-noble)SVEMnet_1.0.3.tar.gz(r-4.4-noble)
SVEMnet_1.0.3.tgz(r-4.4-emscripten)SVEMnet_1.0.3.tgz(r-4.3-emscripten)
SVEMnet.pdf |SVEMnet.html✨
SVEMnet/json (API)
# Install 'SVEMnet' in R: |
install.packages('SVEMnet', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 days agofrom:5ab0b39c4e. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 21 2024 |
R-4.5-linux | OK | Nov 21 2024 |
Exports:svem_significance_testSVEMnet
Dependencies:clicodetoolscolorspacefansifarverforeachgamlssgamlss.datagamlss.distggplot2glmnetgluegtableisobanditeratorslabelinglatticelhslifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerRcppRcppEigenrlangscalesshapesurvivaltibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
SVEMnet: Self-Validated Ensemble Models with Elastic Net Regression | SVEMnet-package |
Plot Coefficient Nonzero Percentages from a SVEMnet Model | coef.svem_model |
Plot Method for SVEM Models | plot.svem_model |
Plot SVEM Significance Test Results for Multiple Responses | plot.svem_significance_test |
Predict Method for SVEM Models | predict.svem_model |
SVEM Significance Test | svem_significance_test |
Fit an SVEMnet Model | SVEMnet |