Package: SNPannotator 0.2.6.0
Alireza Ani
SNPannotator: Investigating the Functional Characteristics of Selected SNPs and Their Vicinity Genomic Region
To investigate the functional characteristics of selected SNPs and their vicinity genomic region. Linked SNPs in moderate to high linkage disequilibrium (e.g. r2>0.50) with the corresponding index SNPs will be selected for further analysis.
Authors:
SNPannotator_0.2.6.0.tar.gz
SNPannotator_0.2.6.0.tar.gz(r-4.5-noble)SNPannotator_0.2.6.0.tar.gz(r-4.4-noble)
SNPannotator_0.2.6.0.tgz(r-4.4-emscripten)SNPannotator_0.2.6.0.tgz(r-4.3-emscripten)
SNPannotator.pdf |SNPannotator.html✨
SNPannotator/json (API)
| # Install 'SNPannotator' in R: |
| install.packages('SNPannotator', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:7d1c1e04be. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 06 2024 |
| R-4.5-linux | OK | Dec 06 2024 |
Exports:annotateLDlistlistDatabasespingServerreleaseVersion
Dependencies:askpassbase64encbslibcachemclicodetoolscolorspacecpp11crayoncurldata.tabledigestdoParallelevaluatefansifarverfastmapfontawesomeforeachfsggplot2gluegtablehighrhmshtmltoolshttrisobanditeratorsjquerylibjsonlitekableExtraknitrlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslopenxlsxpillarpkgconfigprettyunitsprogressR6rappdirsRColorBrewerRcpprlangrmarkdownrstudioapisassscalesstringistringrsvglitesyssystemfontstibbletinytexutf8vctrsviridisLitewithrxfunxml2yamlzip
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Run the annotation pipeline on a list of variants | annotate |
| Find variants in high LD with the lead SNP. | LDlist |
| List population from human database (1000 Genomes project) | listDatabases |
| Checks if the service is alive | pingServer |
| Shows the data releases available on this REST server. | releaseVersion |