Package: SLIDE 1.0.0

Arjun Panda

SLIDE: Single Cell Linkage by Distance Estimation is SLIDE

This statistical method uses the nearest neighbor algorithm to estimate absolute distances between single cells based on a chosen constellation of surface proteins, with these distances being a measure of the similarity between the two cells being compared. Based on Sen, N., Mukherjee, G., and Arvin, A.M. (2015) <doi:10.1016/j.ymeth.2015.07.008>.

Authors:Gourab Mukherjee [aut], Arjun Panda [aut, cre], Ann Arvin [aut], Adrish Sen [aut], Nandini Sen [aut]

SLIDE_1.0.0.tar.gz
SLIDE_1.0.0.tar.gz(r-4.5-noble)SLIDE_1.0.0.tar.gz(r-4.4-noble)
SLIDE_1.0.0.tgz(r-4.4-emscripten)SLIDE_1.0.0.tgz(r-4.3-emscripten)
SLIDE.pdf |SLIDE.html✨
SLIDE/json (API)

# Install 'SLIDE' in R:
install.packages('SLIDE', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • I_sig - Protein Expression Levels in an Infected Cell Sample
  • UN_sig - Protein Expression Levels in an Uninfected Cell Population

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.75 score 56 scripts 143 downloads 50 mentions 2 exports 0 dependencies

Last updated 6 years agofrom:dbc60961ef. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 12 2024
R-4.5-linuxOKNov 12 2024

Exports:bootstrap_cutoffslide

Dependencies:

SLIDE Vignette

Rendered fromuser_doc.Rmdusingknitr::rmarkdownon Nov 12 2024.

Last update: 2018-06-15
Started: 2018-06-15