Package: SIMICO 0.2.0
Jaihee Choi
SIMICO: Set-Based Inference for Multiple Interval-Censored Outcomes
Contains tests for association between a set of genetic variants and multiple correlated outcomes that are interval censored. Interval-censored data arises when the exact time of the onset of an outcome of interest is unknown but known to fall between two time points.
Authors:
SIMICO_0.2.0.tar.gz
SIMICO_0.2.0.tar.gz(r-4.5-noble)SIMICO_0.2.0.tar.gz(r-4.4-noble)
SIMICO_0.2.0.tgz(r-4.4-emscripten)SIMICO_0.2.0.tgz(r-4.3-emscripten)
SIMICO.pdf |SIMICO.html✨
SIMICO/json (API)
NEWS
# Install 'SIMICO' in R: |
install.packages('SIMICO', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:b5ea29839a. Checks:OK: 1 NOTE: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 26 2024 |
R-4.5-linux | NOTE | Oct 26 2024 |
Exports:fd_termgamma_fdgamma_offgamma_ongammasigmagammathetagammatheta_offget_AGet_CausalSNPs_bynumhaz_lefthaz_rightsd_offsd_onsim_gmatsimico_fit_nullsimico_gen_datsimico_outss_fdss_sdst_offsurv_diffsurv_leftsurv_rightwithout_one_phenwithout_two_phen
Dependencies:bindataclasscliCompQuadFormdplyre1071fansifastGHQuadgenericsglueICSKATlatticelifecyclemagrittrMASSMatrixmvtnormpillarpkgconfigproxyR6RcppRcppEigenrjerlangsurvivaltibbletidyselectutf8vctrswithrzoo
Readme and manuals
Help Manual
Help page | Topics |
---|---|
d/d_theta_l | fd_term |
d/d_gamma_l | gamma_fd |
d^2/d_gamma_ldgamma_m | gamma_off |
d^2/d_gamma_ldgamma_l | gamma_on |
d^2/d_gamma_ldsigma^2 | gammasigma |
d^2/d_gamma_kdtheta_k | gammatheta |
d^2/d_gamma_ldtheta_m | gammatheta_off |
Get A vector | get_A |
Get_CausalSNPs_bynum() | Get_CausalSNPs_bynum |
H_ik(L_ik) | haz_left |
H_ik(R_ik) | haz_right |
d^2/d_theta_kdsigma^2 | sd_off |
d^2/dsigma^2^2 | sd_on |
Simulate genetic matrix. | sim_gmat |
simico_fit_null() | simico_fit_null |
simico_gen_dat() | simico_gen_dat |
Get P-Values | simico_out |
d/d_sigma^2 | ss_fd |
d^2/d_sigma^2^2 | ss_sd |
d^2/d_theta_ldsigma^2 | st_off |
S_ik(L_ik) - S_ik(R_ik) | surv_diff |
S_ik(L_ik) | surv_left |
S_ik(R_ik) | surv_right |
Survival Difference Product without Outcome l | without_one_phen |
Survival Difference Product without Outcomes l and m | without_two_phen |