Introduction | Data form | Instructions for SIMICO Functions | Step 1: | Step 2: | Step 3
Package: SIMICO 0.2.0
Jaihee Choi
SIMICO: Set-Based Inference for Multiple Interval-Censored Outcomes
Contains tests for association between a set of genetic variants and multiple correlated outcomes that are interval censored. Interval-censored data arises when the exact time of the onset of an outcome of interest is unknown but known to fall between two time points.
Authors:
SIMICO_0.2.0.tar.gz
SIMICO_0.2.0.tar.gz(r-4.7-any)SIMICO_0.2.0.tar.gz(r-4.6-any)
SIMICO_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
SIMICO/json (API)
| # Install 'SIMICO' in R: |
| install.packages('SIMICO', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:b5ea29839a. Checks:2 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 151 | ||
| source / vignettes | OK | 272 | ||
| linux-release-x86_64 | NOTE | 142 | ||
| wasm-release | OK | 100 |
Exports:fd_termgamma_fdgamma_offgamma_ongammasigmagammathetagammatheta_offget_AGet_CausalSNPs_bynumhaz_lefthaz_rightsd_offsd_onsim_gmatsimico_fit_nullsimico_gen_datsimico_outss_fdss_sdst_offsurv_diffsurv_leftsurv_rightwithout_one_phenwithout_two_phen
Dependencies:bindataclasscliCompQuadFormdplyre1071fastGHQuadgenericsglueICSKATlatticelifecyclemagrittrMASSMatrixmvtnormpillarpkgconfigproxyR6RcppRcppEigenrjerlangsurvivaltibbletidyselectutf8vctrswithrzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| d/d_theta_l | fd_term |
| d/d_gamma_l | gamma_fd |
| d^2/d_gamma_ldgamma_m | gamma_off |
| d^2/d_gamma_ldgamma_l | gamma_on |
| d^2/d_gamma_ldsigma^2 | gammasigma |
| d^2/d_gamma_kdtheta_k | gammatheta |
| d^2/d_gamma_ldtheta_m | gammatheta_off |
| Get A vector | get_A |
| Get_CausalSNPs_bynum() | Get_CausalSNPs_bynum |
| H_ik(L_ik) | haz_left |
| H_ik(R_ik) | haz_right |
| d^2/d_theta_kdsigma^2 | sd_off |
| d^2/dsigma^2^2 | sd_on |
| Simulate genetic matrix. | sim_gmat |
| simico_fit_null() | simico_fit_null |
| simico_gen_dat() | simico_gen_dat |
| Get P-Values | simico_out |
| d/d_sigma^2 | ss_fd |
| d^2/d_sigma^2^2 | ss_sd |
| d^2/d_theta_ldsigma^2 | st_off |
| S_ik(L_ik) - S_ik(R_ik) | surv_diff |
| S_ik(L_ik) | surv_left |
| S_ik(R_ik) | surv_right |
| Survival Difference Product without Outcome l | without_one_phen |
| Survival Difference Product without Outcomes l and m | without_two_phen |