Package: SIBERG 2.0.3

Kevin R. Coombes

SIBERG: Systematic Identification of Bimodally Expressed Genes Using RNAseq Data

Provides models to identify bimodally expressed genes from RNAseq data based on the Bimodality Index. SIBERG models the RNAseq data in the finite mixture modeling framework and incorporates mechanisms for dealing with RNAseq normalization. Three types of mixture models are implemented, namely, the mixture of log normal, negative binomial, or generalized Poisson distribution. See Tong et al. (2013) <doi:10.1093/bioinformatics/bts713>.

Authors:Pan Tong, Kevin R. Coombes

SIBERG_2.0.3.tar.gz
SIBERG_2.0.3.tar.gz(r-4.5-noble)SIBERG_2.0.3.tar.gz(r-4.4-noble)
SIBERG_2.0.3.tgz(r-4.4-emscripten)SIBERG_2.0.3.tgz(r-4.3-emscripten)
SIBERG.pdf |SIBERG.html✨
SIBERG/json (API)
NEWS

# Install 'SIBERG' in R:
install.packages('SIBERG', repos = 'https://cloud.r-project.org')

Bug tracker:https://r-forge.r-project.org/projects/oompa

Datasets:
  • dataList - Simulated Data From 2-component Mixture Models
  • parList - Simulated Data From 2-component Mixture Models

On CRAN:

Conda:

2.00 score 155 downloads 5 exports 1 dependencies

Last updated 3 years agofrom:e9af1c4eda. Checks:3 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 20 2025
R-4.5-linuxOKMar 20 2025
R-4.4-linuxOKMar 20 2025

Exports:fitGPfitLNfitNBfitNLSIBER

Dependencies:mclust

SIBER Vignette

Rendered fromSIBER.Rnwusingutils::Sweaveon Mar 20 2025.

Last update: 2018-05-18
Started: 2017-07-11

Citation

To cite package ‘SIBERG’ in publications use:

Tong P, Coombes KR (2022). SIBERG: Systematic Identification of Bimodally Expressed Genes Using RNAseq Data. R package version 2.0.3, https://CRAN.R-project.org/package=SIBERG.

ATTENTION: This citation information has been auto-generated from the package DESCRIPTION file and may need manual editing, see ‘help("citation")’.

Corresponding BibTeX entry: 

  @Manual{,
    title = {SIBERG: Systematic Identification of Bimodally Expressed
      Genes Using RNAseq Data},
    author = {Pan Tong and Kevin R. Coombes},
    year = {2022},
    note = {R package version 2.0.3},
    url = {https://CRAN.R-project.org/package=SIBERG},
  }