Package: Rgff 0.1.6

Juan Antonio Garcia-Martin

Rgff: R Utilities for GFF Files

R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.

Authors:Juan Antonio Garcia-Martin [cre, aut], Juan Carlos Oliveros [aut, ctb], Rafael Torres-Perez [aut, ctb]

Rgff_0.1.6.tar.gz
Rgff_0.1.6.tar.gz(r-4.5-noble)Rgff_0.1.6.tar.gz(r-4.4-noble)
Rgff_0.1.6.tgz(r-4.4-emscripten)Rgff_0.1.6.tgz(r-4.3-emscripten)
Rgff.pdf |Rgff.html✨
Rgff/json (API)
NEWS

# Install 'Rgff' in R:
install.packages('Rgff', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 3 scripts 215 downloads 9 exports 23 dependencies

Last updated 2 years agofrom:de41c74e9d. Checks:OK: 1 NOTE: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 07 2024
R-4.5-linuxNOTEDec 07 2024

Exports:%>%check_gffget_featuresgff_statsgff_stats_by_chrgtf_to_gff3plot_featuressaf_from_gffsort_gff

Dependencies:clicpp11data.treedplyrfansigenericsgluelifecyclemagrittrpillarpkgconfigpurrrR6RJSONIOrlangstringistringrtibbletidyrtidyselectutf8vctrswithr

Using Rgff

Juan Antonio Garcia-Martin, Juan Carlos Oliveros, Rafael Torres-Perez

Rendered fromUsing_Rgff.Rmdusingknitr::rmarkdownon Dec 07 2024.

Last update: 2022-06-27
Started: 2022-06-23