0. About Rgff | 1. Check the consistency and order of a GFF file | 2. Getting the stats | 3. Extracting the feature organization of the GFF file | 4. Sorting GFF files | 5. Convert a GFF file to a SAF file | 6. Convert a GTF to a GFF3 file
Package: Rgff 0.1.7
Juan Antonio Garcia-Martin
Rgff: R Utilities for GFF Files
R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.
Authors:
Rgff_0.1.7.tar.gz
Rgff_0.1.7.tar.gz(r-4.7-any)Rgff_0.1.7.tar.gz(r-4.6-any)
Rgff_0.1.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
Rgff/json (API)
| # Install 'Rgff' in R: |
| install.packages('Rgff', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:013a480e7e. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 162 | ||
| source / vignettes | OK | 210 | ||
| linux-release-x86_64 | OK | 167 | ||
| wasm-release | OK | 182 |
Exports:%>%check_gffget_featuresgff_statsgff_stats_by_chrgtf_to_gff3plot_featuressaf_from_gffsort_gff
Dependencies:clidata.treedplyrgenericsgluejsonlitelifecyclemagrittrpillarpkgconfigR6rlangstringitibbletidyselectutf8vctrswithr
