Package: RRate 1.0
Wei Jiang
RRate: Estimating Replication Rate for Genome-Wide Association Studies
Replication Rate (RR) is the probability of replicating a statistically significant association in genome-wide association studies. This R-package provide the estimation method for replication rate which makes use of the summary statistics from the primary study. We can use the estimated RR to determine the sample size of the replication study, and to check the consistency between the results of the primary study and those of the replication study.
Authors:
RRate_1.0.tar.gz
RRate_1.0.tar.gz(r-4.5-noble)RRate_1.0.tar.gz(r-4.4-noble)
RRate_1.0.tgz(r-4.4-emscripten)RRate_1.0.tgz(r-4.3-emscripten)
RRate.pdf |RRate.html✨
RRate/json (API)
| # Install 'RRate' in R: |
| install.packages('RRate', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- param - Example summary statistics
- smryStats1 - Example summary statistics
- smryStats2 - Example summary statistics
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 years agofrom:0aad98a91f. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 01 2024 |
| R-4.5-linux | OK | Dec 01 2024 |
Exports:HLtestrepRateEstrepSampleSizeRRrepSampleSizeRR2SEest
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Estimating Replication Rate for Genome-Wide Association Studies | RRate-package RRate |
| Hosmer-Lemeshow test | HLtest |
| Sample size determination for the replication study based on RR | repSampleSizeRR repSampleSizeRR2 |
| Estimating Replication Rate for primary associations | repRateEst RRate-functions |
| Estimating standard error of the observed log-odds ratio | SEest |
| Example summary statistics | param smryStats1 smryStats2 |