Package: RPatternJoin 1.0.0
Daniil Matveev
RPatternJoin: String Similarity Joins for Hamming and Levenshtein Distances
This project is a tool for words edit similarity joins (a.k.a. all-pairs similarity search) under small (< 3) edit distance constraints. It works for Levenshtein/Hamming distances and words from any alphabet. The software was originally developed for joining amino-acid/nucleotide sequences from Adaptive Immune Repertoires, where the number of words is relatively large (10^5-10^6) and the average length of words is relatively small (10-100).
Authors:
RPatternJoin_1.0.0.tar.gz
RPatternJoin_1.0.0.tar.gz(r-4.5-noble)RPatternJoin_1.0.0.tar.gz(r-4.4-noble)
RPatternJoin_1.0.0.tgz(r-4.4-emscripten)RPatternJoin_1.0.0.tgz(r-4.3-emscripten)
RPatternJoin.pdf |RPatternJoin.html✨
RPatternJoin/json (API)
NEWS
| # Install 'RPatternJoin' in R: |
| install.packages('RPatternJoin', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 days agofrom:3f2f308e90. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 26 2024 |
| R-4.5-linux-x86_64 | OK | Oct 26 2024 |
Exports:edit_dist1_examplesimilarityJoin
Dependencies:RcppRcppArmadillo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| String Similarity Joins for Hamming and Levenshtein Distances | RPatternJoin-package RPatternJoin |
| Generate Example Strings with Edit Distance 1 | edit_dist1_example |
| Build Adjacency Matrix | similarityJoin |
