Package: RPatternJoin 1.0.0

Daniil Matveev

RPatternJoin: String Similarity Joins for Hamming and Levenshtein Distances

This project is a tool for words edit similarity joins (a.k.a. all-pairs similarity search) under small (< 3) edit distance constraints. It works for Levenshtein/Hamming distances and words from any alphabet. The software was originally developed for joining amino-acid/nucleotide sequences from Adaptive Immune Repertoires, where the number of words is relatively large (10^5-10^6) and the average length of words is relatively small (10-100).

Authors:Daniil Matveev [aut, cre], Martin Leitner-Ankerl [ctb, cph], Gene Harvey [ctb, cph]

RPatternJoin_1.0.0.tar.gz
RPatternJoin_1.0.0.tar.gz(r-4.5-noble)RPatternJoin_1.0.0.tar.gz(r-4.4-noble)
RPatternJoin_1.0.0.tgz(r-4.4-emscripten)RPatternJoin_1.0.0.tgz(r-4.3-emscripten)
RPatternJoin.pdf |RPatternJoin.html
RPatternJoin/json (API)
NEWS

# Install 'RPatternJoin' in R:
install.packages('RPatternJoin', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 4 scripts 2 exports 2 dependencies

Last updated 5 days agofrom:3f2f308e90. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 26 2024
R-4.5-linux-x86_64OKOct 26 2024

Exports:edit_dist1_examplesimilarityJoin

Dependencies:RcppRcppArmadillo