Package: RNentropy 1.2.3
Federico Zambelli
RNentropy: Entropy Based Method for the Detection of Significant Variation in Gene Expression Data
An implementation of a method based on information theory devised for the identification of genes showing a significant variation of expression across multiple conditions. Given expression estimates from any number of RNA-Seq samples and conditions it identifies genes or transcripts with a significant variation of expression across all the conditions studied, together with the samples in which they are over- or under-expressed. Zambelli et al. (2018) <doi:10.1093/nar/gky055>.
Authors:
RNentropy_1.2.3.tar.gz
RNentropy_1.2.3.tar.gz(r-4.5-noble)RNentropy_1.2.3.tar.gz(r-4.4-noble)
RNentropy_1.2.3.tgz(r-4.4-emscripten)RNentropy_1.2.3.tgz(r-4.3-emscripten)
RNentropy.pdf |RNentropy.html✨
RNentropy/json (API)
NEWS
| # Install 'RNentropy' in R: |
| install.packages('RNentropy', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- RN_BarresLab_FPKM - RN_BarresLab_FPKM
- RN_BarresLab_design - RN_BarresLab_design
- RN_Brain_Example_design - RN_Brain_Example_design
- RN_Brain_Example_tpm - RN_Brain_Example_tpm
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:8d0a617d24. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 19 2024 |
| R-4.5-linux | OK | Dec 19 2024 |
Exports:RN_calcRN_calc_GPVRN_calc_LPVRN_pmiRN_selectRNentropy
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Entropy Based Method for the Detection of Significant Variation in Gene Expression Data | RNentropy-package |
| RN_BarresLab_design | RN_BarresLab_design |
| RN_BarresLab_FPKM | RN_BarresLab_FPKM |
| RN_Brain_Example_design | RN_Brain_Example_design |
| RN_Brain_Example_tpm | RN_Brain_Example_tpm |
| RN_calc | RN_calc |
| RN_calc_GPV | RN_calc_GPV |
| RN_calc_LPV | RN_calc_LPV |
| Compute point mutual information matrix for the experimental conditions. | RN_pmi |
| Select transcripts/genes with significant p-values. | RN_select |
| RNentropy | RNentropy |