Package: REffectivePred 1.0.1

Razvan Romanescu

REffectivePred: Pandemic Prediction Model in an SIRS Framework

A suite of methods to fit and predict case count data using a compartmental SIRS (Susceptible – Infectious – Recovered – Susceptible) model, based on an assumed specification of the effective reproduction number. The significance of this approach is that it relates epidemic progression to the average number of contacts of infected individuals, which decays as a function of the total susceptible fraction remaining in the population. The main functions are pred.curve(), which computes the epidemic curve for a set of parameters, and estimate.mle(), which finds the best fitting curve to observed data. The easiest way to pass arguments to the functions is via a config file, which contains input settings required for prediction, and the package offers two methods, navigate_to_config() which points the user to the configuration file, and re_predict() for starting the fit-predict process. The main model was published in Razvan G. Romanescu et al. <doi:10.1016/j.epidem.2023.100708>.

Authors:Razvan Romanescu [aut, cre], Songdi Hu [aut], Md Ashiqul Haque [aut], Olivier Tremblay-Savard [aut]

REffectivePred_1.0.1.tar.gz
REffectivePred_1.0.1.tar.gz(r-4.5-noble)REffectivePred_1.0.1.tar.gz(r-4.4-noble)
REffectivePred_1.0.1.tgz(r-4.4-emscripten)REffectivePred_1.0.1.tgz(r-4.3-emscripten)
REffectivePred.pdf |REffectivePred.html
REffectivePred/json (API)

# Install 'REffectivePred' in R:
install.packages('REffectivePred', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.30 score 1 stars 6 scripts 155 downloads 14 exports 4 dependencies

Last updated 11 days agofrom:3fa466aeb3. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 13 2024
R-4.5-linuxOKNov 13 2024

Exports:c_helperci.curveestimate.mlefind_endsfind_startsload_configlog_lklhnavigate_to_configplot_outputspred.curveranges_to_wavesre_predictrt_empiricalwaves_1d_list

Dependencies:configlatticeyamlzoo