Package: RESET 1.0.0
H. Robert Frost
RESET: Reconstruction Set Test
Contains logic for sample-level variable set scoring using randomized reduced rank reconstruction error. Frost, H. Robert (2023) "Reconstruction Set Test (RESET): a computationally efficient method for single sample gene set testing based on randomized reduced rank reconstruction error" <doi:10.1101/2023.04.03.535366>.
Authors:
RESET_1.0.0.tar.gz
RESET_1.0.0.tar.gz(r-4.5-noble)RESET_1.0.0.tar.gz(r-4.4-noble)
RESET_1.0.0.tgz(r-4.4-emscripten)RESET_1.0.0.tgz(r-4.3-emscripten)
RESET.pdf |RESET.html✨
RESET/json (API)
NEWS
| # Install 'RESET' in R: |
| install.packages('RESET', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 months agofrom:d1d93c4ef2. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 03 2024 |
| R-4.5-linux | OK | Sep 03 2024 |
Exports:convertToPerVarScoresconvertToPerVarScoresForSeuratcreateVarSetCollectionrandomColumnSpacerandomSVDresetresetForSeuratresetViaPCA
10x PBMC 3k log normalization MSigDB BioCarta collection example
Rendered fromRESET_PBMC3K_BioCarta_LogNormalization.Rnwusingutils::Sweaveon Sep 03 2024.Last update: 2023-04-07
Started: 2023-04-07
Seurat pbmc_small log normalization example
Rendered fromRESET_pbmc_small.Rnwusingutils::Sweaveon Sep 03 2024.Last update: 2023-04-07
Started: 2023-04-07
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Reconstruction Set Test | RESET-package |
| Utility function to that converts RESET scores to/from per-variable scores | convertToPerVarScores |
| Utility function to that converts RESET scores contained in a Seurat object to/from per-variable scores | convertToPerVarScoresForSeurat |
| Utility function to help create a variable set collection list object | createVarSetCollection |
| Implementation of a sparse powered randomized algorithm for computing a basis for the column space of a matrix. | randomColumnSpace |
| Implementation of a sparse powered randomized singular value decomposition. | randomSVD |
| Reconstruction Set Test (RESET) | reset |
| RESET wrapper for scRNA-seq data processed using the Seurat framework | resetForSeurat |
| Reconstruction Set Test (RESET) via PCA | resetViaPCA |