Package: RESET 1.0.0

H. Robert Frost

RESET: Reconstruction Set Test

Contains logic for sample-level variable set scoring using randomized reduced rank reconstruction error. Frost, H. Robert (2023) "Reconstruction Set Test (RESET): a computationally efficient method for single sample gene set testing based on randomized reduced rank reconstruction error" <doi:10.1101/2023.04.03.535366>.

Authors:H. Robert Frost [aut, cre]

RESET_1.0.0.tar.gz
RESET_1.0.0.tar.gz(r-4.5-noble)RESET_1.0.0.tar.gz(r-4.4-noble)
RESET_1.0.0.tgz(r-4.4-emscripten)RESET_1.0.0.tgz(r-4.3-emscripten)
RESET.pdf |RESET.html✨
RESET/json (API)
NEWS

# Install 'RESET' in R:
install.packages('RESET', repos = 'https://cloud.r-project.org')

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.30 score 256 downloads 8 exports 2 dependencies

Last updated 1 years agofrom:d1d93c4ef2. Checks:3 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKApr 01 2025
R-4.5-linuxOKApr 01 2025
R-4.4-linuxOKApr 01 2025

Exports:convertToPerVarScoresconvertToPerVarScoresForSeuratcreateVarSetCollectionrandomColumnSpacerandomSVDresetresetForSeuratresetViaPCA

Dependencies:latticeMatrix

10x PBMC 3k log normalization MSigDB BioCarta collection example

Rendered fromRESET_PBMC3K_BioCarta_LogNormalization.Rnwusingutils::Sweaveon Apr 01 2025.

Last update: 2023-04-07
Started: 2023-04-07

Seurat pbmc_small log normalization example

Rendered fromRESET_pbmc_small.Rnwusingutils::Sweaveon Apr 01 2025.

Last update: 2023-04-07
Started: 2023-04-07

Citation

To cite package ‘RESET’ in publications use:

Frost H (2024). RESET: Reconstruction Set Test. R package version 1.0.0, https://CRAN.R-project.org/package=RESET.

Corresponding BibTeX entry: 

  @Manual{,
    title = {RESET: Reconstruction Set Test},
    author = {H. Robert Frost},
    year = {2024},
    note = {R package version 1.0.0},
    url = {https://CRAN.R-project.org/package=RESET},
  }