This package is considered a duplicate. The official version of this package is found at:https://bmrb-io.r-universe.dev/RBMRB

Package: RBMRB 3.0.0

Kumaran Baskaran

RBMRB: Interface to the Biological Magnetic Resonance Data Bank ('BMRB')

A comprehensive interface to the Biological Magnetic Resonance Data Bank ('BMRB') <https://bmrb.io>, mirroring all functionality of the 'PyBMRB' 'Python' package (v3.0). Provides four modules: (1) 'ChemicalShift' for fetching per-entry chemical shift data from the 'BMRB' 'REST' 'API' or local 'NMR-STAR' files; (2) 'ChemicalShiftStatistics' for database-wide statistical queries; (3) Spectra for simulating '1H-15N' 'HSQC', '1H-13C' 'HSQC', '1H-1H' 'TOCSY', and generic 2D 'NMR' spectra as interactive plots; and (4) Histogram for chemical shift distribution visualizations with optional filtering by pH, temperature, and ambiguity code. All interactive plots are rendered via 'plotly'. Uses the 'BMRB' REST API v2 <https://api.bmrb.io/v2/>.

Authors:Kumaran Baskaran [aut, cre]

RBMRB_3.0.0.tar.gz
RBMRB_3.0.0.zip(r-4.7-any)RBMRB_3.0.0.zip(r-4.6-any)
RBMRB_3.0.0.tar.gz(r-4.7-any)RBMRB_3.0.0.tar.gz(r-4.6-any)
RBMRB_3.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
RBMRB/json (API)

# Install 'RBMRB' in R:

install.packages('RBMRB', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bmrb-io/rbmrb/issues

On CRAN:

3.02 score 21 scripts 46 downloads 1 mentions 36 exports 65 dependencies

Last updated from:ab40c34969. Checks:6 OK. Indexed: no.

Target	Result	Time
linux-devel	OK	132
source / vignettes	OK	176
linux-release	OK	109
windows-devel	OK	93
windows-release	OK	89
wasm-release	OK	115

Exports:bmrb_citation bmrb_debug_entry bmrb_fetch_entry bmrb_from_pdb bmrb_list_entries bmrb_pdb_ids bmrb_search bmrb_status bmrb_test bmrb_upload_entry c13hsqc conditional_cs_hist create_2d_peaklist create_c13hsqc_peaklist create_n15hsqc_peaklist create_tocsy_peaklist cs_from_bmrb cs_from_file cs_hist cs_hist2d cs_peek cs_stats cs_summary cs_table cs_to_df export_peak_list filter_cs_outliers generic_2d get_2d_cs_data get_cs_data get_cs_from_bmrb_db n15hsqc RBMRB_version standard_amino_acids standard_nucleic_acids tocsy

Dependencies:askpass base64enc bslib cachem cli cpp11 crosstalk curl data.table digest dplyr evaluate farver fastmap fontawesome fs generics ggplot2 glue gtable highr htmltools htmlwidgets httr httr2 isoband jquerylib jsonlite knitr labeling later lazyeval lifecycle magrittr memoise mime openssl otel pillar pkgconfig plotly promises purrr R6 rappdirs RColorBrewer Rcpp rlang rmarkdown S7 sass scales stringi stringr sys tibble tidyr tidyselect tinytex utf8 vctrs viridisLite withr xfun yaml

Introduction to RBMRB

Rendered fromRBMRB-intro.Rmdusingknitr::rmarkdown

Last update: 2026-10-14
Started: 2026-10-14

Help page	Topics
Get the citation for a BMRB entry	bmrb_citation
Diagnose BMRB entry fetch problems	bmrb_debug_entry
Fetch raw metadata for a BMRB entry	bmrb_fetch_entry
Get BMRB IDs associated with a PDB entry	bmrb_from_pdb
List all BMRB entry IDs	bmrb_list_entries
Get PDB IDs associated with a BMRB entry	bmrb_pdb_ids
Search BMRB using the instant-search endpoint	bmrb_search
Get BMRB API server status	bmrb_status
Run a connectivity self-test	bmrb_test
Upload an NMR-STAR file to BMRB for temporary access	bmrb_upload_entry
Simulate a ^1H{-}^{13}C HSQC spectrum	c13hsqc
Plot a conditional chemical shift histogram	conditional_cs_hist
Build a generic 2D peak list for any two atoms	create_2d_peaklist
Build a 1H-13C HSQC peak list	create_c13hsqc_peaklist
Build a 1H-15N HSQC peak list	create_n15hsqc_peaklist
Build a 1H-1H TOCSY peak list	create_tocsy_peaklist
Extract chemical shifts from BMRB database entries	cs_from_bmrb
Extract chemical shifts from local NMR-STAR files	cs_from_file
Plot a chemical shift distribution histogram	cs_hist
Plot a 2D chemical shift correlation map	cs_hist2d
Peek at a nested CS structure	cs_peek
Compute summary statistics for a set of chemical shifts	cs_stats
Summarise a nested chemical shift list	cs_summary
Get a flat data.frame of chemical shifts for one or more BMRB entries	cs_table
Convert a nested CS list to a tidy data.frame	cs_to_df
Export a peak list to CSV or Sparky format	export_peak_list
Remove outliers from a numeric vector	filter_cs_outliers
Plot a generic 2D NMR correlation spectrum	generic_2d
Fetch paired 2D chemical shift data for two atoms in the same residue	get_2d_cs_data
Fetch chemical shift data from the BMRB database	get_cs_data
Fetch raw BMRB chemical shift data (no outlier filtering)	get_cs_from_bmrb_db
Simulate a ^{1}H{-}^{15}N HSQC spectrum	n15hsqc
Get the installed RBMRB version	RBMRB_version
List the 20 standard amino acid codes	standard_amino_acids
List standard nucleic acid residue codes	standard_nucleic_acids
Simulate a ^1H{-}^1H TOCSY spectrum	tocsy

Package: RBMRB 3.0.0

RBMRB: Interface to the Biological Magnetic Resonance Data Bank ('BMRB')

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)