Package: PvSTATEM 0.1.2

Tymoteusz Kwiecinski

PvSTATEM: Reading, Quality Control and Preprocessing of MBA (Multiplex Bead Assay) Data

Speeds up the process of loading raw data from MBA (Multiplex Bead Assay) examinations, performs quality control checks, and automatically normalises the data, preparing it for more advanced, downstream tasks. The main objective of the package is to create a simple environment for a user, who does not necessarily have experience with R language. The package is developed within the project of the same name - 'PvSTATEM', which is an international project aiming for malaria elimination.

Authors:Tymoteusz Kwiecinski [aut, cre], Jakub Grzywaczewski [aut], Mateusz Nizwantowski [aut], Przemyslaw Biecek [ths], Nuno Sepulveda [ths]

PvSTATEM_0.1.2.tar.gz
PvSTATEM_0.1.2.tar.gz(r-4.5-noble)PvSTATEM_0.1.2.tar.gz(r-4.4-noble)
PvSTATEM_0.1.2.tgz(r-4.4-emscripten)PvSTATEM_0.1.2.tgz(r-4.3-emscripten)
PvSTATEM.pdf |PvSTATEM.html
PvSTATEM/json (API)

# Install 'PvSTATEM' in R:
install.packages('PvSTATEM', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/mini-pw/pvstatem/issues

3.18 score 508 downloads 14 exports 58 dependencies

Last updated 1 months agofrom:0b47c201ce. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKDec 09 2024
R-4.5-linuxOKDec 09 2024

Exports:create_standard_curve_model_analytegenerate_plate_reportget_nmfiis_valid_data_typeis_valid_sample_typePlateBuilderplot_countsplot_layoutplot_mfi_for_analyteplot_standard_curve_analyteplot_standard_curve_analyte_with_modelprocess_plateread_luminex_datatranslate_sample_names_to_sample_types

Dependencies:bitbit64cellrangerclicliprcolorspacecpp11crayondplyrfansifarvergenericsggplot2ggrepelgluegtablehmsisobandlabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmunsellnlmenplrpillarpkgconfigpngprettyunitsprogressR.methodsS3R.ooR.utilsR6RColorBrewerRcppreadrreadxlrematchrlangscalesstringistringrsvglitesystemfontstibbletidyselecttimechangetzdbutf8vctrsviridisLitevroomwithr

Basic PvSTATEM functionalities

Rendered fromexample_script.Rmdusingknitr::rmarkdownon Dec 09 2024.

Last update: 2024-11-02
Started: 2024-10-04