Package: ProbBreed 1.0.4.9

Saulo Chaves

ProbBreed: Probability Theory for Selecting Candidates in Plant Breeding

Use probability theory under the Bayesian framework for calculating the risk of selecting candidates in a multi-environment context. Contained are functions used to fit a Bayesian multi-environment model (based on the available presets), extract posterior values and maximum posterior values, compute the variance components, check the model’s convergence, and calculate the probabilities. For both across and within-environments scopes, the package computes the probability of superior performance and the pairwise probability of superior performance. Furthermore, the probability of superior stability and the pairwise probability of superior stability across environments is estimated. A joint probability of superior performance and stability is also provided.

Authors:Saulo Chaves [aut, cre], Kaio Dias [aut, cph], Matheus Krause [aut]

ProbBreed_1.0.4.9.tar.gz
ProbBreed_1.0.4.9.zip(r-4.7-x86_64)ProbBreed_1.0.4.9.zip(r-4.7-arm64)ProbBreed_1.0.4.9.zip(r-4.6-x86_64)ProbBreed_1.0.4.9.zip(r-4.6-arm64)
ProbBreed_1.0.4.9.tar.gz(r-4.7-arm64)ProbBreed_1.0.4.9.tar.gz(r-4.7-x86_64)ProbBreed_1.0.4.9.tar.gz(r-4.6-arm64)ProbBreed_1.0.4.9.tar.gz(r-4.6-x86_64)
ProbBreed_1.0.4.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ProbBreed/json (API)

# Install 'ProbBreed' in R:
install.packages('ProbBreed', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/saulo-chaves/probbreed/issues

Pkgdown/docs site:https://saulo-chaves.github.io

Uses libs:
  • onetbb– Parallelism library for C++
  • c++– GNU Standard C++ Library v3
Datasets:
  • maize - Maize real dataset
  • soy - Soybean real dataset
  • soy_pat - Soybean Pan-African Trials data set

On CRAN:

Conda:

onetbbcpp

1.70 score 397 downloads 4 exports 48 dependencies

Last updated from:50ad3fef01. Checks:10 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK919
linux-devel-x86_64OK1143
source / vignettesOK1080
linux-release-arm64OK989
linux-release-x86_64OK946
windows-devel-arm64OK1056
windows-devel-x86_64OK1566
windows-release-arm64OK996
windows-release-x86_64OK1254
wasm-releaseOK732

Exports:bayes_metbpsiextr_outsprob_sup

Dependencies:abindbackportsBHcallrcheckmateclicpp11descdistributionalfarvergenericsggplot2gluegridExtragtableinlineisobandlabelinglifecycleloomagrittrmatrixStatsnumDerivotelpillarpkgbuildpkgconfigposteriorprocessxpsQuickJSRR6RColorBrewerRcppRcppEigenRcppParallelrlangrstanrstantoolsS7scalesStanHeaderstensorAtibbleutf8vctrsviridisLitewithr