Package: ProActive 0.0.2

ProActive: Detect Elevations and Gaps in Mapped Sequencing Read Coverage

Automate the detection of gaps and elevations in mapped sequencing read coverage using a 2D pattern-matching algorithm. 'ProActive' detects, characterizes and visualizes read coverage patterns in both genomes and metagenomes. Optionally, users may provide gene predictions associated with their genome or metagenome in the form of a .gff file. In this case, 'ProActive' will generate an additional output table containing the gene predictions found within the detected regions of gapped and elevated read coverage.

Authors:Jessie Maier [aut, cre, cph], Manuel Kleiner [aut, ths]