Package: PoweREST 0.1.0

Lan Shui

PoweREST: A Bootstrap-Based Power Estimation Tool for Spatial Transcriptomics

Power estimation and sample size calculation for 10X Visium Spatial Transcriptomics data to detect differential expressed genes between two conditions based on bootstrap resampling. See Shui et al. (2024) <doi:10.1101/2024.08.30.610564> for method details.

Authors:Lan Shui [aut, cre]

PoweREST_0.1.0.tar.gz
PoweREST_0.1.0.tar.gz(r-4.5-noble)PoweREST_0.1.0.tar.gz(r-4.4-noble)
PoweREST_0.1.0.tgz(r-4.4-emscripten)
PoweREST.pdf |PoweREST.html
PoweREST/json (API)

# Install 'PoweREST' in R:
install.packages('PoweREST', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 165 downloads 11 exports 180 dependencies

Last updated 6 months agofrom:2ca025e0cf. Checks:3 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 09 2025
R-4.5-linuxOKMar 09 2025
R-4.4-linuxOKMar 09 2025

Exports:%>%fit_powerestfit_XGBoostplotly_powerestPoweRESTPoweREST_genePoweREST_subsetpred_powerestpred_XGBoostvis_powerestvis_XGBoost

Dependencies:abindaskpassbase64encBHbitopsbriobslibcachemcallrcaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tabledecidodeldirdescdiffobjdigestdoParalleldotCall64dplyrdqrngevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomeforeachfsfuturefuture.applygenericsggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolsherehighrhmshtmltoolshtmlwidgetshttpuvhttricaigraphirlbaisobanditeratorsjpegjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleidenbaselifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypillarpkgbuildpkgconfigpkgloadplotlyplyrpngpolyclippraiseprettyunitsprocessxprogressprogressrpromisespspurrrR6RANNrappdirsrasterrayimagerayrenderrayshaderrayvertexRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppThreadRcppTOMLresamplereshape2reticulaterglrlangrmarkdownROCRrprojrootRSpectraRtsnesassscalesscamscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspacefillrspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrsurvivalsyssystemfontstensorterraterrainmeshrtestthattibbletidyrtidyselecttifftinytexutf8uwotvctrsviridisLitewaldowithrxfunxgboostxtableyamlzoo

A simple workflow for PoweREST

Rendered fromPoweREST.Rmdusingknitr::rmarkdownon Mar 09 2025.

Last update: 2024-09-10
Started: 2024-09-10