Package: PoiClaClu 1.0.2.1
Daniela Witten
PoiClaClu: Classification and Clustering of Sequencing Data Based on a Poisson Model
Implements the methods described in the paper, Witten (2011) Classification and Clustering of Sequencing Data using a Poisson Model, Annals of Applied Statistics 5(4) 2493-2518.
Authors:
PoiClaClu_1.0.2.1.tar.gz
PoiClaClu_1.0.2.1.tar.gz(r-4.5-noble)PoiClaClu_1.0.2.1.tar.gz(r-4.4-noble)
PoiClaClu_1.0.2.1.tgz(r-4.4-emscripten)PoiClaClu_1.0.2.1.tgz(r-4.3-emscripten)
PoiClaClu.pdf |PoiClaClu.html✨
PoiClaClu/json (API)
| # Install 'PoiClaClu' in R: |
| install.packages('PoiClaClu', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 years agofrom:ce5e281c0b. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 17 2024 |
| R-4.5-linux | OK | Sep 17 2024 |
Exports:ClassifyClassify.cvColorDendrogramCountDataSetFindBestTransformNullModelNullModelTestPoissonDistanceprint.poiclaprint.poiclacvprint.poidist
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Classification and clustering of RNA sequencing data using a Poisson model | PoiClaClu-package PoiClaClu |
| Classify observations using a Poisson model. | Classify |
| Function to do cross-validation for Poisson classification. | Classify.cv |
| Color the leaves in a hierarchical clustering dendrogram | ColorDendrogram |
| Generate a simulated sequencing data set using a negative binomial model. | CountDataSet |
| Find the power transformation that makes a data set approximately Poisson. | FindBestTransform |
| Given a n-by-p data matrix, compute the corresponding n-by-n Poisson dissimilarity matrix. | PoissonDistance |