Package: PlotFTIR 1.0.0

Philip Bulsink

PlotFTIR: Plot FTIR Spectra

The goal of 'PlotFTIR' is to easily and quickly kick-start the production of journal-quality Fourier Transform Infra-Red (FTIR) spectral plots in R using 'ggplot2'. The produced plots can be published directly or further modified by 'ggplot2' functions. L'objectif de 'PlotFTIR' est de démarrer facilement et rapidement la production des tracés spectraux de spectroscopie infrarouge à transformée de Fourier (IRTF) de qualité journal dans R à l'aide de 'ggplot2'. Les tracés produits peuvent être publiés directement ou modifiés davantage par les fonctions 'ggplot2'.

Authors:Philip Bulsink [aut, cre], Ulrich Makanda [trl], His Majesty the King in Right of Canada, as represented by the Minister of Natural Resources [cph]

PlotFTIR_1.0.0.tar.gz
PlotFTIR_1.0.0.tar.gz(r-4.5-noble)PlotFTIR_1.0.0.tar.gz(r-4.4-noble)
PlotFTIR_1.0.0.tgz(r-4.4-emscripten)PlotFTIR_1.0.0.tgz(r-4.3-emscripten)
PlotFTIR.pdf |PlotFTIR.html✨
PlotFTIR/json (API)
NEWS

# Install 'PlotFTIR' in R:
install.packages('PlotFTIR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/nrcan/plotftir/issues

Datasets:

2.70 score 4 scripts 22 exports 12 dependencies

Last updated 8 days agofrom:ace455171b. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 14 2024
R-4.5-linuxOKNov 14 2024

Exports:absorbance_to_transmittanceadd_scalar_valueadd_wavenumber_markeraverage_spectrachemospec_to_plotftircompress_low_energyget_plot_sample_idsir_to_plotftirmove_plot_legendnormalize_spectraplot_ftirplot_ftir_stackedplotftir_to_chemospecplotftir_to_irread_ftirread_ftir_directoryrecalculate_baselinerename_plot_sample_idssave_plotsubtract_scalar_valuetransmittance_to_absorbancezoom_in_on_range

Dependencies:clicolorspacefarvergluelabelinglifecyclemunsellR6RColorBrewerrlangscalesviridisLite

Plotting FTIR Spectra

Philip Bulsink

Rendered fromplotting_ftir_spectra.Rmdusingknitr::rmarkdownon Nov 14 2024.

Last update: 2024-11-13
Started: 2024-11-13

Readme and manuals

Help Manual

Help pageTopics
Add or Subtract Scalar Valueadd_scalar_value add_subtract_scalar subtract_scalar_value
Add a Marker at a Wavenumberadd_wavenumber_marker
Average FTIR Spectraaverage_spectra
FTIR Bio-diesel databiodiesel
`ChemoSec` to `PlotFTIR` conversionschemospec_to_plotftir
Compress Low-Energy Regioncompress_low_energy
Convert Between Absorbance and Transmittanceabsorbance_to_transmittance conversion transmittance_to_absorbance
Get Plot Sample IDsget_plot_sample_ids
Convert `ir` to `PlotFTIR` data formatir_to_plotftir
Move Plot Legendmove_plot_legend
Normalize FTIR spectranormalize_spectra
Plot FTIR Spectra Overlaidplot_ftir
Plot FTIR in stacked formatplot_ftir_stacked
Convert `PlotFTIR` data to `ChemoSpec` formatplotftir_to_chemospec
Convert `PlotFTIR` data to `ir`plotftir_to_ir
Read FTIR fileread_ftir
Read FTIR fileread_ftir_directory
Recalculate Baselinerecalculate_baseline
Rename Sample IDs in Plotrename_plot_sample_ids
FTIR example datasample_spectra
Save FTIR Plotsave_plot
Zoom in on a spectral rangezoom_in_on_range