This package is considered a duplicate. The official version of this package is found at:https://ohdsi.r-universe.dev/PhenotypeR

Package: PhenotypeR 0.1.0

Edward Burn

PhenotypeR: Assess Study Cohorts Using a Common Data Model

Phenotype study cohorts in data mapped to the Observational Medical Outcomes Partnership Common Data Model. Diagnostics are run at the database, code list, cohort, and population level to assess whether study cohorts are ready for research.

Authors:Edward Burn [aut, cre], Marti Catala [aut], Xihang Chen [aut], Marta Alcalde-Herraiz [aut], Albert Prats-Uribe [aut]

PhenotypeR_0.1.0.tar.gz
PhenotypeR_0.1.0.tar.gz(r-4.5-noble)PhenotypeR_0.1.0.tar.gz(r-4.4-noble)
PhenotypeR_0.1.0.tgz(r-4.4-emscripten)PhenotypeR_0.1.0.tgz(r-4.3-emscripten)
PhenotypeR.pdf |PhenotypeR.html✨
PhenotypeR/json (API)

# Install 'PhenotypeR' in R:

install.packages('PhenotypeR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ohdsi/phenotyper/issues

Pkgdown site:https://ohdsi.github.io

3.60 score 16 scripts 18 exports 129 dependencies

Last updated 20 days agofrom:dbb0ad37b8. Checks:OK: 2. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Dec 06 2024
R-4.5-linux	OK	Dec 06 2024

Exports:%>%addCodelistAttribute bind codelistDiagnostics cohortDiagnostics databaseDiagnostics exportSummarisedResult importSummarisedResult matchedDiagnostics phenotypeDiagnostics populationDiagnostics settings shinyDiagnostics summariseAchillesCodeUse summariseCodeUse summariseCohortCodeUse summariseOrphanCodes suppress

Dependencies:askpass backports base64enc bigD bit bit64 bitops blob bslib cachem CDMConnector checkmate cli clipr clock CodelistGenerator CohortCharacteristics CohortConstructor colorspace commonmark cpp11 crayon credentials curl data.table DBI dbplyr desc diffobj digest dplyr duckdb evaluate fansi farver fastmap flextable fontawesome fontBitstreamVera fontLiberation fontquiver fs gdtools generics gert ggplot2 gh gitcreds glue gt gtable highr hms htmltools htmlwidgets httr2 IncidencePrevalence ini isoband jquerylib jsonlite juicyjuice knitr labeling lattice lifecycle lubridate magrittr markdown MASS Matrix memoise mgcv mime munsell nlme officer omock omopgenerics OmopSketch openssl PatientProfiles pillar pkgconfig prettyunits progress purrr R6 ragg rappdirs RColorBrewer Rcpp reactable reactR readr RJSONIO rlang rmarkdown rprojroot rstudioapi sass scales snakecase stringi stringr sys systemfonts textshaping tibble tidyr tidyselect timechange tinytex tzdb usethis utf8 uuid V8 vctrs viridisLite visOmopResults vroom waldo whisker withr xfun xml2 yaml zip