Package: PRISMA 0.2-7

Tammo Krueger

PRISMA: Protocol Inspection and State Machine Analysis

Loads and processes huge text corpora processed with the sally toolbox (<http://www.mlsec.org/sally/>). sally acts as a very fast preprocessor which splits the text files into tokens or n-grams. These output files can then be read with the PRISMA package which applies testing-based token selection and has some replicate-aware, highly tuned non-negative matrix factorization and principal component analysis implementation which allows the processing of very big data sets even on desktop machines.

Authors:Tammo Krueger, Nicole Kraemer

PRISMA_0.2-7.tar.gz
PRISMA_0.2-7.zip(r-4.7-any)PRISMA_0.2-7.zip(r-4.6-any)
PRISMA_0.2-7.tar.gz(r-4.7-any)PRISMA_0.2-7.tar.gz(r-4.6-any)
PRISMA_0.2-7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PRISMA/json (API)

# Install 'PRISMA' in R:

install.packages('PRISMA', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

asap - The ASAP Data Set
thesis - The Thesis Data Set

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

4.28 score 38 scripts 316 downloads 9.8k mentions 13 exports 24 dependencies

Last updated from:4e334cb8c2. Checks:6 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	138
source / vignettes	OK	170
linux-release	OK	132
windows-devel	OK	105
windows-release	OK	104
wasm-release	OK	102

Exports:corpusToPrisma estimateDimension getDuplicateData getMatrixFactorizationLabels loadPrismaData plot.prisma plot.prismaDimension plot.prismaMF print.prisma print.prismaDimension prismaDuplicatePCA prismaHclust prismaNMF

Dependencies:bitops caTools cli cpp11 farver ggplot2 glue gplots gtable gtools isoband KernSmooth labeling lattice lifecycle Matrix R6 RColorBrewer rlang S7 scales vctrs viridisLite withr

Quick introduction

Rendered fromPRISMA.Rnwusingutils::Sweave

Last update: 2013-12-10
Started: 2013-12-10

Help page	Topics
Protocol Inspection and State Machine Analysis	PRISMA-package PRISMA
The ASAP Data Set	asap
Convert tm copus to PRISMA	corpusToPrisma
Estimate Inner Dimension	estimateDimension
Restores Data with Duplicates	getDuplicateData
Convert Coordinates of Matrix Factorization to Labels	getMatrixFactorizationLabels
Load PRISMA Data Files	loadPrismaData
Generics For PRISMA Objects	plot.prisma print.prisma
Generics For PRISMA Objects	plot.prismaDimension print.prismaDimension
Generics For PRISMA Objects	plot.prismaMF
Matrix Factorization Based on Replicate-Aware PCA	prismaDuplicatePCA
Matrix Factorization Based on Hierarchical Clustering	prismaHclust
Matrix Factorization Based on Replicate-Aware NMF	prismaNMF
The Thesis Data Set	thesis

Package: PRISMA 0.2-7

PRISMA: Protocol Inspection and State Machine Analysis

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)