Package: PRISMA 0.2-7
Tammo Krueger
PRISMA: Protocol Inspection and State Machine Analysis
Loads and processes huge text corpora processed with the sally toolbox (<http://www.mlsec.org/sally/>). sally acts as a very fast preprocessor which splits the text files into tokens or n-grams. These output files can then be read with the PRISMA package which applies testing-based token selection and has some replicate-aware, highly tuned non-negative matrix factorization and principal component analysis implementation which allows the processing of very big data sets even on desktop machines.
Authors:
PRISMA_0.2-7.tar.gz
PRISMA_0.2-7.tar.gz(r-4.5-noble)PRISMA_0.2-7.tar.gz(r-4.4-noble)
PRISMA_0.2-7.tgz(r-4.4-emscripten)PRISMA_0.2-7.tgz(r-4.3-emscripten)
PRISMA.pdf |PRISMA.html✨
PRISMA/json (API)
| # Install 'PRISMA' in R: |
| install.packages('PRISMA', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 years agofrom:4e334cb8c2. Checks:2 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 17 2025 |
| R-4.5-linux | OK | Feb 17 2025 |
Exports:corpusToPrismaestimateDimensiongetDuplicateDatagetMatrixFactorizationLabelsloadPrismaDataplot.prismaplot.prismaDimensionplot.prismaMFprint.prismaprint.prismaDimensionprismaDuplicatePCAprismaHclustprismaNMF
Dependencies:bitopscaToolsclicolorspacefansifarverggplot2gluegplotsgtablegtoolsisobandKernSmoothlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Protocol Inspection and State Machine Analysis | PRISMA-package PRISMA |
| The ASAP Data Set | asap |
| Convert tm copus to PRISMA | corpusToPrisma |
| Estimate Inner Dimension | estimateDimension |
| Restores Data with Duplicates | getDuplicateData |
| Convert Coordinates of Matrix Factorization to Labels | getMatrixFactorizationLabels |
| Load PRISMA Data Files | loadPrismaData |
| Generics For PRISMA Objects | plot.prisma print.prisma |
| Generics For PRISMA Objects | plot.prismaDimension print.prismaDimension |
| Generics For PRISMA Objects | plot.prismaMF |
| Matrix Factorization Based on Replicate-Aware PCA | prismaDuplicatePCA |
| Matrix Factorization Based on Hierarchical Clustering | prismaHclust |
| Matrix Factorization Based on Replicate-Aware NMF | prismaNMF |
| The Thesis Data Set | thesis |