Package: PINSPlus 2.0.9

Van-Dung Pham

PINSPlus: Clustering Algorithm for Data Integration and Disease Subtyping

Provides a robust approach for omics data integration and disease subtyping. PINSPlus is fast and supports the analysis of large datasets with hundreds of thousands of samples and features. The software automatically determines the optimal number of clusters and then partitions the samples in a way such that the results are robust against noise and data perturbation (Nguyen et al. (2019) <doi:10.1093/bioinformatics/bty1049>, Nguyen et al. (2017)<doi:10.1101/gr.215129.116>, Nguyen et al. (2021)<doi:10.3389/fonc.2021.725133>).

Authors:Hung Nguyen [aut], Bang Tran [aut], Duc Tran [aut], Tin Nguyen [aut], Van-Dung Pham [cre]

PINSPlus_2.0.9.tar.gz
PINSPlus_2.0.9.tar.gz(r-4.7-arm64)PINSPlus_2.0.9.tar.gz(r-4.7-x86_64)PINSPlus_2.0.9.tar.gz(r-4.6-arm64)PINSPlus_2.0.9.tar.gz(r-4.6-x86_64)
PINSPlus_2.0.9.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PINSPlus/json (API)

# Install 'PINSPlus' in R:
install.packages('PINSPlus', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
Datasets:
  • AML2004 - Acute myelogenous leukemia dataset
  • KIRC - Kidney renal clear cell carcinoma dataset

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

openblascpp

3.43 score 1 packages 30 scripts 337 downloads 3 mentions 2 exports 16 dependencies

Last updated from:b2eb7ad295. Checks:6 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK142
linux-devel-x86_64OK149
source / vignettesOK215
linux-release-arm64OK153
linux-release-x86_64OK144
wasm-releaseOK135

Exports:PerturbationClusteringSubtypingOmicsData

Dependencies:clustercodetoolsdoParallelentropyFNNforeachimputeirlbaiteratorslatticeMatrixmatrixStatsmclustRcppRcppArmadilloRcppParallel

PINSPlus: Clustering Algorithm for Data Integration and Disease Subtyping

| Hung Nguyen, Bang Tran, Duc Tran and Tin Nguyen$^*$ | Department of Computer Science and Engineering | University of Nevada, Reno, NV 89557

Rendered fromPINSPlus.Rmdusingknitr::knitron May 26 2026.

Last update: 2021-12-14
Started: 2018-03-16