Package: PHclust 0.1.0
Zhili Qiao
PHclust: Poisson Hurdle Clustering for Sparse Microbiome Data
Clustering analysis for sparse microbiome data, based on a Poisson hurdle model.
Authors:
PHclust_0.1.0.tar.gz
PHclust_0.1.0.tar.gz(r-4.5-noble)PHclust_0.1.0.tar.gz(r-4.4-noble)
PHclust_0.1.0.tgz(r-4.4-emscripten)PHclust_0.1.0.tgz(r-4.3-emscripten)
PHclust.pdf |PHclust.html✨
PHclust/json (API)
| # Install 'PHclust' in R: |
| install.packages('PHclust', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- sample_data - Sample of sparse microbiome count data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:3214d29664. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 14 2024 |
| R-4.5-linux | OK | Dec 14 2024 |
Exports:HybridPHclusterplot_abundance
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate optimal number of clusters. | Hybrid |
| Poisson hurdle clustering | PHcluster |
| Plot of feature abundance level | plot_abundance |
| Sample of sparse microbiome count data | sample_data |