Package: PEACH 0.1.1
Jinyan Chan
PEACH: Pareto Enrichment Analysis for Combining Heterogeneous Datasets
A meta gene set analysis tool developed based on principles of Pareto dominance (William B T Mock (2011) <doi:10.1007/978-1-4020-9160-5_341>). It is designed to combine gene set analysis p-values from multiple transcriptome datasets (e.g., microarray and RNA-Seq). The novel Pareto method for p-value combination allows PEACH to properly model heterogeneity and correlation in Omics datasets.
Authors:
PEACH_0.1.1.tar.gz
PEACH_0.1.1.tar.gz(r-4.5-noble)PEACH_0.1.1.tar.gz(r-4.4-noble)
PEACH_0.1.1.tgz(r-4.4-emscripten)PEACH_0.1.1.tgz(r-4.3-emscripten)
PEACH.pdf |PEACH.html✨
PEACH/json (API)
| # Install 'PEACH' in R: |
| install.packages('PEACH', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- KEGG - KEGG pathways
- TCGA.input - A sample of 16 cancers gene differential expression analysis t statistic score data
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 years agofrom:2f98e51c60. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 29 2024 |
| R-4.5-linux | OK | Oct 29 2024 |
Exports:peach
Dependencies:BiobaseBiocGenericscodetoolsDEoptimRlatticeMASSmathjaxrMatrixMatrixModelsmetapmnormtmultcompmulttestmutossmvtnormnumDerivplotrixqqconfquantregrbibutilsRcppRdpackrobustbasesandwichsnSparseMsurvivalTFisherTH.datazoo
