Package: OmopViewer 0.1.0

Martí Català

OmopViewer: Visualise OMOP Results using 'shiny' Applications

Visualise results obtained from analysing data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model using 'shiny' applications.

Authors:Martí Català [aut, cre], Yuchen Guo [aut], Edward Burn [ctb], Nuria Mercade-Besora [ctb], Elin Rowlands [ctb], Cecilia Campanile [ctb]

OmopViewer_0.1.0.tar.gz
OmopViewer_0.1.0.tar.gz(r-4.5-noble)OmopViewer_0.1.0.tar.gz(r-4.4-noble)
OmopViewer_0.1.0.tgz(r-4.4-emscripten)OmopViewer_0.1.0.tgz(r-4.3-emscripten)
OmopViewer.pdf |OmopViewer.html✨
OmopViewer/json (API)

# Install 'OmopViewer' in R:

install.packages('OmopViewer', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ohdsi/omopviewer/issues

2.70 score 4 scripts 12 exports 84 dependencies

Last updated 2 days agofrom:8da8167621. Checks:OK: 2. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Oct 22 2024
R-4.5-linux	OK	Oct 22 2024

Exports:cardFromMd cardSummary correctSettings emptySummarisedResult exportStaticApp exportSummarisedResult filterData getChoices importSummarisedResult launchDynamicApp omopViewerTable tidyData

Dependencies:askpass base64enc blob bslib cachem cli clipr commonmark cpp11 crayon credentials crosstalk curl DBI dbplyr desc digest dplyr DT evaluate fansi fastmap fontawesome fs generics gert gh gitcreds glue highr htmltools htmlwidgets httpuv httr2 ini jquerylib jsonlite knitr later lazyeval lifecycle magrittr markdown memoise mime omopgenerics openssl pillar pkgconfig promises purrr R.cache R.methodsS3 R.oo R.utils R6 rappdirs Rcpp rlang rmarkdown rprojroot rstudioapi sass shiny snakecase sourcetools stringi stringr styler sys tibble tidyr tidyselect tinytex usethis utf8 vctrs visOmopResults whisker withr xfun xtable yaml zip

Plot and tables in OmopViewer

Rendered fromsupported_result_type.Rmdusingknitr::rmarkdownon Oct 22 2024.

Last update: 2024-10-21
Started: 2024-10-21

Citation

Readme and manuals

Help Manual

Help page	Topics
Create a `bslib::card()` object from a `.md` file.	cardFromMd
Create a `bslib::card()` object from a `<summarised_result>` object.	cardSummary
Add the strata, group and additional columns to settings with the tidyColumns (`visOmopResults::splitGroup()`, `visOmopResults::splitStrata()`, `visOmopResults::splitAdditional()`) for each 'result_id'.	correctSettings
Export and launch a static shiny specific to the provided results.	exportStaticApp
This function is used to filter data in shinys that inputs are defined following.	filterData
Get the different options that a summarised_result have.	getChoices
Launch a dynamic shiny app where you can upload results.	launchDynamicApp
Create a formatted gt table.	omopViewerTable
Get a tidy tibble from a `summarised_result` object.	tidyData