Package: OmnibusFisher 1.0
Qi Yan
OmnibusFisher: A Modified Fisher’s Method to Test Overall Gene-Level Effect
The separate p-values of SNPs, RNA expressions and DNA methylations are calculated by KM regression. The correlation between different omics data are taken into account. This method can be applied to either samples with all three types of omics data or samples with two types.
Authors:
OmnibusFisher_1.0.tar.gz
OmnibusFisher_1.0.tar.gz(r-4.5-noble)OmnibusFisher_1.0.tar.gz(r-4.4-noble)
OmnibusFisher_1.0.tgz(r-4.4-emscripten)OmnibusFisher_1.0.tgz(r-4.3-emscripten)
OmnibusFisher.pdf |OmnibusFisher.html✨
OmnibusFisher/json (API)
| # Install 'OmnibusFisher' in R: |
| install.packages('OmnibusFisher', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- All_header - This is the data for examples
- G - This is the data for examples
- M - This is the data for examples
- R - This is the data for examples
- pheno - This is the data for examples
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 years agofrom:76a1a9dc5b. Checks:2 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 06 2025 |
| R-4.5-linux | OK | Feb 06 2025 |
Exports:OmnibusFisher
Dependencies:cliCompQuadFormDBIgluelatticelifecyclemagrittrMatrixminqamitoolsnumDerivRcppRcppArmadillorlangstringistringrsurveysurvivalvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| This is the data for examples | All_header example_data G M pheno R |
| A modified Fisher’s method (Omnibus-Fisher) to combine separate p-values of SNPs, RNA expressions and DNA methylations into an overall gene-level p-value | OmnibusFisher |