Package: OlinkAnalyze 3.8.2
OlinkAnalyze:Facilitate Analysis of Proteomic Data from Olink
A collection of functions to facilitate analysis of proteomic data from Olink, primarily NPX data that has been exported from Olink Software. The functions also work on QUANT data from Olink by log- transforming the QUANT data. The functions are focused on reading data, facilitating data wrangling and quality control analysis, performing statistical analysis and generating figures to visualize the results of the statistical analysis. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.
Authors:
OlinkAnalyze_3.8.2.tar.gz
OlinkAnalyze_3.8.2.tar.gz(r-4.5-noble)OlinkAnalyze_3.8.2.tar.gz(r-4.4-noble)
OlinkAnalyze_3.8.2.tgz(r-4.4-emscripten)OlinkAnalyze_3.8.2.tgz(r-4.3-emscripten)
OlinkAnalyze.pdf |OlinkAnalyze.html✨
OlinkAnalyze/json (API)
NEWS
# InstallOlinkAnalyze in R: |
install.packages('OlinkAnalyze',repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/olink-proteomics/olinkrpackage/issues
Last updated 8 days agofrom:b419c2ae67
Exports:%>%olink_anovaolink_anova_posthocolink_boxplotolink_bridgeselectorolink_color_discreteolink_color_gradientolink_displayPlateDistributionsolink_displayPlateLayoutolink_dist_plotolink_fill_discreteolink_fill_gradientolink_heatmap_plotolink_lmerolink_lmer_plotolink_lmer_posthocolink_lodolink_normalizationolink_normalization_bridgeolink_normalization_nolink_normalization_subsetolink_one_non_parametricolink_one_non_parametric_posthocolink_ordinalRegressionolink_ordinalRegression_posthocolink_palolink_pathway_enrichmentolink_pathway_heatmapolink_pathway_visualizationolink_pca_plotolink_plate_randomizerolink_qc_plotolink_ttestolink_umap_plotolink_volcano_plotolink_wilcoxread_NPXset_plot_theme
Dependencies:abindbackportsbootbroomcarcarDatacellrangerclicolorspacecorrplotcowplotcpp11crayonDerivdoBydplyremmeansestimabilityfansifarverforcatsgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehmsisobandlabelinglatticelifecyclelme4lmerTestmagrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkminqamodelrmunsellmvtnormnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpolynomprettyunitsprogresspurrrquantregR6RColorBrewerRcppRcppEigenreadxlrematchrlangrstatixscalesSparseMstringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisLitewithrzip
Calculating LOD from Olink® Explore data
Rendered fromLOD.Rmd
usingknitr::rmarkdown
on Jun 28 2024.Last update: 2024-06-28
Started: 2024-06-28
Introduction to bridging Olink® NPX datasets
Rendered frombridging_introduction.Rmd
usingknitr::rmarkdown
on Jun 28 2024.Last update: 2024-02-23
Started: 2023-04-26
Olink® Analyze Vignette
Rendered fromVignett.Rmd
usingknitr::rmarkdown
on Jun 28 2024.Last update: 2024-06-28
Started: 2022-02-10
Outlier Exclusion Vignette
Rendered fromOutlierExclusion.Rmd
usingknitr::rmarkdown
on Jun 28 2024.Last update: 2024-01-14
Started: 2023-04-26
Plate Randomization Vignette
Rendered fromplate_randomizer.Rmd
usingknitr::rmarkdown
on Jun 28 2024.Last update: 2024-01-14
Started: 2023-04-26