Package: OUwie 3.0.2

Jeremy M. Beaulieu

OUwie: Analysis of Evolutionary Rates in an OU Framework

Estimates rates for continuous character evolution under Brownian motion and Ornstein-Uhlenbeck based Hansen models that allow both the strength of the pull and stochastic motion to vary across selective regimes. Beaulieu et al. (2012).

Authors:Jeremy M. Beaulieu [aut, cre], Brian O'Meara [aut]

OUwie_3.0.2.tar.gz
OUwie_3.0.2.tar.gz(r-4.7-any)OUwie_3.0.2.tar.gz(r-4.6-any)
OUwie_3.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
OUwie/json (API)

# Install 'OUwie' in R:
install.packages('OUwie', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/thej022214/ouwie/issues

Datasets:
  • trait - An example dataset
  • trait - An example dataset
  • tree - An example dataset
  • tree - An example dataset

On CRAN:

Conda:

4.60 score 1 stars 199 scripts 581 downloads 22 mentions 10 exports 81 dependencies

Last updated from:1f6b71df1f. Checks:2 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING207
source / vignettesOK316
linux-release-x86_64WARNING192
wasm-releaseOK171

Exports:check.identifyfix.kappaOUwieOUwie.ancOUwie.bootOUwie.contourOUwie.dredgeOUwie.fixedOUwie.formatOUwie.sim

Dependencies:apebitopscliclusterGenerationcodacodetoolscolorspacecombinatcorHMMcorpcorcpp11data.tabledeldirDEoptimdeSolvedigestdoParallelexpmfarverfastmatchforeachfuturefuture.applygeigergenericsGenSAggplot2globalsgluegmpgridExtragtableigraphinterpisobanditeratorsjsonlitelabelinglatticelhslifecyclelistenvmagrittrmapsMASSMatrixmnormtmvtnormncbitnlmenloptrnnetnumDerivoptimParallelpaleotreeparallellyphangornphylolmphytoolspkgconfigplyrpngquadprogR6RColorBrewerRcppRcppEigenRCurlreshape2rlangRmpfrS7scalesscatterplot3dstringistringrsubplexvctrsviridisviridisLitewithr

Calculation Update
Timeline | Rendered equation error in original Beaulieu et al. (2012) | Variance-covariance matrix calculation error in OUwie | Details of the issue | General equations | Expectation of the trait value for species i | Covariance between species i and j | A simple example | FAQ
Rendered fromcalculationUpdate.Rmdusingknitr::rmarkdown

Last update: 2026-07-02
Started: 2026-07-02

New additions as of OUwie 2.1
Bug fixes and deprecated functions | New Features | Idenfiability tests | Contour plots | Ancestral trait reconstruction | Generalized three-point structured algorithm | Estimating tip fog | References
Rendered fromOUwie_2.1_adds.Rmdusingknitr::rmarkdown

Last update: 2026-07-02
Started: 2020-05-12