Package: OEFPIL 0.1.1

Stanislav Zamecnik

OEFPIL: Optimal Estimation of Function Parameters by Iterated Linearization

Package for estimating the parameters of a nonlinear function using iterated linearization via Taylor series. Method is based on Kubáček (2000) ISBN: 80-244-0093-6. The algorithm is a generalization of the procedure given in Köning, R., Wimmer, G. and Witkovský, V. (2014) <doi:10.1088/0957-0233/25/11/115001>.

Authors:Stanislav Zamecnik [aut, cre], Vojtech Sindlar [aut], Zdenka Gerslova [aut], Gejza Wimmer [aut], Technology Agency of the Czech Republic [fnd], Masaryk University, a public university, ID: 00216224 [cph]

OEFPIL_0.1.1.tar.gz
OEFPIL_0.1.1.tar.gz(r-4.5-noble)OEFPIL_0.1.1.tar.gz(r-4.4-noble)
OEFPIL_0.1.1.tgz(r-4.4-emscripten)OEFPIL_0.1.1.tgz(r-4.3-emscripten)
OEFPIL.pdf |OEFPIL.html✨
OEFPIL/json (API)
NEWS

# Install 'OEFPIL' in R:
install.packages('OEFPIL', repos = 'https://cloud.r-project.org')
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.70 score 196 downloads 7 exports 33 dependencies

Last updated 3 years agofrom:46ab1b9a20. Checks:2 OK, 1 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 06 2025
R-4.5-linuxNOTEMar 06 2025
R-4.4-linuxOKMar 06 2025

Exports:confBandsconfInt.OEFPILcurvplot.OEFPILNanoIndent.OEFPILOEFPILortresiduals.OEFPILparamplot.OEFPIL

Dependencies:clicolorspaceDerivfansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmatrixcalcmgcvminpack.lmmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcpprlangscalestibbleutf8vctrsviridisLitewithr

Citation

To cite package ‘OEFPIL’ in publications use:

Zamecnik S, Sindlar V, Gerslova Z, Wimmer G (2021). OEFPIL: Optimal Estimation of Function Parameters by Iterated Linearization. R package version 0.1.1, https://CRAN.R-project.org/package=OEFPIL.

Corresponding BibTeX entry: 

  @Manual{,
    title = {OEFPIL: Optimal Estimation of Function Parameters by
      Iterated Linearization},
    author = {Stanislav Zamecnik and Vojtech Sindlar and Zdenka
      Gerslova and Gejza Wimmer},
    year = {2021},
    note = {R package version 0.1.1},
    url = {https://CRAN.R-project.org/package=OEFPIL},
  }

Readme and manuals

title: "README" author: "stanislav zamecnik" date: "03 11 2021" output: html_document: default pdf_document: default

OEFPIL

Optimal Estimation of Parameters by Iterated Linearization

The original version of this software was written in R by Stanislav Zámečník, Zdeňka Geršlová and Vojtěch Šindlář in year 2021. The package is based on theoretical background of work of prof. Gejza Wimmer and afterwards implemented by mentioned authors. Main features of the package include:

  • estimation of parameters of nonlinear function by iterated linearization
  • possibility to use generic functions to OEFPIL objects
    • extract confidence bands for set of points
    • confidence intervals for parameters
    • extract summary of used model
    • get covariance matrix for model parameters
  • plot the OEFPIL object in a different ways
    • plot of estimated curve
    • plot of estimated curve with ggplot2 package
  • count orthogonal residuals for OEFPIL object
  • print out information about OEFPIL object
  • calculate estimates of parameters in Nanoindentation
  • two datasets from nanoindentation measurements

Installation

You can install the release version of package from CRAN:

install.packages("OEFPIL")

Or the development version from GitHub repository:

devtools::install_github("OEFPIL/OEFPIL")

Usage

In R session do:

library(MASS)
steamdata <- steam
colnames(steamdata) <- c("x","y")
k <- nrow(steamdata)
CM <- diag(rep(10,2*k))

Creating OEFPIL object which we want to work with

library(OEFPIL)
st1 <- OEFPIL(steamdata, y ~ b1 * 10 ^ (b2 * x/ (b3 + x)),
list(b1 = 5, b2 = 8, b3 = 200), CM, useNLS = FALSE)

Displaying results using summary function

summary(st1)

## Summary of the result:  
##  
## y ~ b1 * 10^(b2 * x/(b3 + x))
## 
##     Param Est         Std Dev   CI Bound 2.5 %   CI Bound 97.5 %
## b1   4.487870        1.526903         1.495196          7.480545
## b2   7.188155        1.865953         3.530953         10.845356
## b3 221.837783       99.953658        25.932214        417.743352
## 
##  Estimated covariance matrix: 
##            b1         b2        b3
## b1   2.331432   2.296195  134.3054
## b2   2.296195   3.481782  184.6313
## b3 134.305405 184.631318 9990.7337
## 
##  Number of iterations: 10

Plot of estimated function

plot(st1, signif.level = 0.05, interval = "conf", main  = "Estimated function by iterated linearization")

Ggplot graph of estimated function

library(ggplot2)
curvplot.OEFPIL(st1, signif.level = 0.05)

For more information and examples see:

?OEFPIL

This software OEFPIL was financed by the Technology Agency of the Czech Republic within the ZETA Programme. https://www.tacr.cz .