Getting Started | Paired Statistic | Alternate Inputs | Banked Statistic
Package: NewmanOmics 1.1.3
Kevin R. Coombes
NewmanOmics: Extending the Newman Studentized Range Statistic to Transcriptomics
Extends the classical Newman studentized range statistic in various ways that can be applied to genome-scale transcriptomic or other expression data.
Authors:
NewmanOmics_1.1.3.tar.gz
NewmanOmics_1.1.3.tar.gz(r-4.7-any)NewmanOmics_1.1.3.tar.gz(r-4.6-any)
NewmanOmics_1.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
NewmanOmics/json (API)
| # Install 'NewmanOmics' in R: |
| install.packages('NewmanOmics', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://r-forge.r-project.org/projects/oompa
Datasets:
Last updated from:08325c2cf3. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 145 | ||
| source / vignettes | OK | 204 | ||
| linux-release-x86_64 | OK | 140 | ||
| wasm-release | OK | 106 |
Exports:bankStatcomputeCutoffcomputeFDRcreateBankfitMix3histimagepairedStatplot
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Newman Banked Statistic | bankStat createBank |
| Compute FDR from Three-Component Beta Mixture | computeCutoff computeFDR fitMix3 |
| Class "MixOf3Beta" | hist,MixOf3Beta-method image,MixOf3Beta-method MixOf3Beta MixOf3Beta-class plot,MixOf3Beta,missing-method |
| Datasets to Illustrate the Newman Tests | GSE6631 LungPair newman-data |
| Class "NewmanPaired" | dim,NewmanPaired-method hist,NewmanPaired-method NewmanPaired NewmanPaired-class plot,NewmanPaired,missing-method [,NewmanPaired-method |
| Paired Newman Statistic | pairedStat |