Package: NewmanOmics 1.0.11

Kevin R. Coombes

NewmanOmics: Extending the Newman Studentized Range Statistic to Transcriptomics

Extends the classical Newman studentized range statistic in various ways that can be applied to genome-scale transcriptomic or other expression data.

Authors:Zachary Abrams, Greg Gershkowitz, Anoushka Joglekar, Chao Liu, Kevin R. Coombes

NewmanOmics_1.0.11.tar.gz
NewmanOmics_1.0.11.tar.gz(r-4.5-noble)NewmanOmics_1.0.11.tar.gz(r-4.4-noble)
NewmanOmics_1.0.11.tgz(r-4.4-emscripten)NewmanOmics_1.0.11.tgz(r-4.3-emscripten)
NewmanOmics.pdf |NewmanOmics.html✨
NewmanOmics/json (API)

# Install 'NewmanOmics' in R:
install.packages('NewmanOmics', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://r-forge.r-project.org/projects/oompa

Datasets:
  • GSE6631 - Datasets to Illustrate the Newman Tests
  • LungPair - Datasets to Illustrate the Newman Tests

2.08 score 12 scripts 495 downloads 9 exports 2 dependencies

Last updated 8 months agofrom:36f7346b65. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 25 2024
R-4.5-linuxOKDec 25 2024

Exports:bankStatcomputeCutoffcomputeFDRcreateBankfitMix3histimagepairedStatplot

Dependencies:clusteroompaBase

NewmanOmics: Tools for Personalized Transcriptomics

Kevin R. Coombes

Rendered fromnewmanomics.Rmdusingknitr::rmarkdownon Dec 25 2024.

Last update: 2019-08-03
Started: 2019-08-03

Readme and manuals

Help Manual

Help pageTopics
Newman Banked StatisticbankStat createBank
Compute FDR from Three-Component Beta MixturecomputeCutoff computeFDR fitMix3
Class "MixOf3Beta"hist,MixOf3Beta-method image,MixOf3Beta-method MixOf3Beta MixOf3Beta-class plot,MixOf3Beta,missing-method
Datasets to Illustrate the Newman TestsGSE6631 LungPair newman-data
Class "NewmanPaired"dim,NewmanPaired-method hist,NewmanPaired-method NewmanPaired NewmanPaired-class plot,NewmanPaired,missing-method [,NewmanPaired-method
Paired Newman StatisticpairedStat