Package: NewmanOmics 1.0.13

Kevin R. Coombes

NewmanOmics: Extending the Newman Studentized Range Statistic to Transcriptomics

Extends the classical Newman studentized range statistic in various ways that can be applied to genome-scale transcriptomic or other expression data.

Authors:Zachary B. Abrams [aut], Greg Gershkowitz [aut], Anoushka Joglekar [aut], Chao Liu [aut], Kevin R. Coombes [aut, cre]

NewmanOmics_1.0.13.tar.gz
NewmanOmics_1.0.13.tar.gz(r-4.5-noble)NewmanOmics_1.0.13.tar.gz(r-4.4-noble)
NewmanOmics_1.0.13.tgz(r-4.4-emscripten)NewmanOmics_1.0.13.tgz(r-4.3-emscripten)
NewmanOmics.pdf |NewmanOmics.html✨
NewmanOmics/json (API)

# Install 'NewmanOmics' in R:
install.packages('NewmanOmics', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://r-forge.r-project.org/projects/oompa

Datasets:
  • GSE6631 - Datasets to Illustrate the Newman Tests
  • LungPair - Datasets to Illustrate the Newman Tests

2.38 score 12 scripts 646 downloads 9 exports 2 dependencies

Last updated 23 hours agofrom:1ef68e9380. Checks:2 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 19 2025
R-4.5-linuxOKFeb 19 2025

Exports:bankStatcomputeCutoffcomputeFDRcreateBankfitMix3histimagepairedStatplot

Dependencies:clusteroompaBase

NewmanOmics: Tools for Personalized Transcriptomics

Kevin R. Coombes

Rendered fromnewmanomics.Rmdusingknitr::rmarkdownon Feb 19 2025.

Last update: 2019-08-03
Started: 2019-08-03

Readme and manuals

Help Manual

Help pageTopics
Newman Banked StatisticbankStat createBank
Compute FDR from Three-Component Beta MixturecomputeCutoff computeFDR fitMix3
Class "MixOf3Beta"hist,MixOf3Beta-method image,MixOf3Beta-method MixOf3Beta MixOf3Beta-class plot,MixOf3Beta,missing-method
Datasets to Illustrate the Newman TestsGSE6631 LungPair newman-data
Class "NewmanPaired"dim,NewmanPaired-method hist,NewmanPaired-method NewmanPaired NewmanPaired-class plot,NewmanPaired,missing-method [,NewmanPaired-method
Paired Newman StatisticpairedStat