Package: NEpiC 1.0.1
Peifeng Ruan
NEpiC: Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals
Package for a Network assisted algorithm for Epigenetic studies using mean and variance Combined signals: NEpiC. NEpiC combines both signals in mean and variance differences in methylation level between case and control groups searching for differentially methylated sub-networks (modules) using the protein-protein interaction network.
Authors:
NEpiC_1.0.1.tar.gz
NEpiC_1.0.1.tar.gz(r-4.7-any)NEpiC_1.0.1.tar.gz(r-4.6-any)
NEpiC_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
NEpiC/json (API)
| # Install 'NEpiC' in R: |
| install.packages('NEpiC', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:be42570cb7. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 125 | ||
| source / vignettes | OK | 196 | ||
| linux-release-x86_64 | OK | 120 | ||
| wasm-release | OK | 100 |
Exports:c_dmsc_scorecandidate_genespermutation
Dependencies:classclicpp11e1071farverggplot2gldgluegtableigraphisobandlabelinglatticelifecyclelmommagrittrMASSMatrixmvtnormPairedDatapkgconfigproxyR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Combined signals dense modules searching algorithm. | c_dms |
| Computing the mean and variance combined signal scores | c_score |
| Chosing candidate genes. | candidate_genes |
| Validating identified modules using permutations | permutation |