1. Introduction | 2. Types of Traits | 3. Mixed-Trait Dissimilarity | 4. Hierarchical Clustering | 5. Principal Coordinates Analysis (PCoA) | 6. Cluster Evaluation | 7. Trait Contribution Analysis | 8. Example Workflow | 8.1 Load the package | 8.2 Prepare an example dataset | 8.3 Calculate mixed-trait dissimilarities | 8.4 Perform hierarchical clustering | 8.5 Conduct Principal Coordinates Analysis | 8.6 Evaluate clusters and trait separation | 8.7 Visualize the results | 9. Applications | 10. Conclusion | 11. References
Package: MixedDiversityAnalysis 0.1.0
Prabhat Kumar
MixedDiversityAnalysis: Analysis and Visualization of Mixed-Trait Dissimilarity
Provides methods for analysing datasets containing quantitative, qualitative, binary, and ordinal traits. Computes mixed-trait dissimilarities and performs hierarchical clustering using multiple linkage methods. Supports principal coordinates analysis (PCoA), cluster evaluation, trait contribution analysis, and graphical visualization. The package facilitates mixed-trait diversity assessment and characterization of crop germplasm. For more detail see Gower (1971) <doi:10.2307/2528823> and Jukanti et al. (2026) <doi:10.1007/s44187-025-00715-w>.
Authors:
MixedDiversityAnalysis_0.1.0.tar.gz
MixedDiversityAnalysis_0.1.0.zip(r-4.7-any)MixedDiversityAnalysis_0.1.0.zip(r-4.6-any)
MixedDiversityAnalysis_0.1.0.tar.gz(r-4.7-any)MixedDiversityAnalysis_0.1.0.tar.gz(r-4.6-any)
MixedDiversityAnalysis_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MixedDiversityAnalysis/json (API)
| # Install 'MixedDiversityAnalysis' in R: |
| install.packages('MixedDiversityAnalysis', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:8c70dded23. Checks:6 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 118 | ||
| source / vignettes | OK | 335 | ||
| linux-release | OK | 150 | ||
| windows-devel | OK | 66 | ||
| windows-release | OK | 72 | ||
| wasm-release | OK | 89 |
Exports:mixed_clustermixed_distancemixed_diversitymixed_pcoamixed_visualize
Dependencies:cluster
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Perform Hierarchical Clustering on Mixed-Trait Data | mixed_cluster |
| Calculate Mixed-Trait Dissimilarity | mixed_distance |
| Measure Trait Contributions to Cluster Separation | mixed_diversity |
| Perform Principal Coordinates Analysis | mixed_pcoa |
| Visualize Mixed-Trait Clustering Results | mixed_visualize |