Package: MicrobiomeStat 1.4

Jun Chen

MicrobiomeStat: Statistical Methods for Microbiome Compositional Data

A suite of methods for powerful and robust microbiome data analysis addressing zero-inflation, phylogenetic structure and compositional effects. Includes the LinDA method for differential abundance analysis (Zhou et al. (2022)<doi:10.1186/s13059-022-02655-5>), the BMDD (Bimodal Dirichlet Distribution) method for accurate modeling and imputation of zero-inflated microbiome sequencing data (Zhou et al. (2025)<doi:10.1371/journal.pcbi.1013124>) and compositional sparse CCA methods for microbiome multi-omics data integration (Deng et al. (2024) <doi:10.3389/fgene.2024.1489694>).

Authors:Xianyang Zhang [aut], Jun Chen [aut, cre], Huijuan Zhou [ctb], Linsui Deng [ctb]

MicrobiomeStat_1.4.tar.gz
MicrobiomeStat_1.4.tar.gz(r-4.7-arm64)MicrobiomeStat_1.4.tar.gz(r-4.7-x86_64)MicrobiomeStat_1.4.tar.gz(r-4.6-arm64)MicrobiomeStat_1.4.tar.gz(r-4.6-x86_64)
MicrobiomeStat_1.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MicrobiomeStat/json (API)

# Install 'MicrobiomeStat' in R:
install.packages('MicrobiomeStat', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • smokers - Microbiome data from the human upper respiratory tract

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cpp

2.93 score 1 packages 131 scripts 1.1k downloads 8 exports 86 dependencies

Last updated from:67a6cc7d72. Checks:6 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK200
linux-devel-x86_64OK197
source / vignettesOK197
linux-release-arm64OK195
linux-release-x86_64OK204
wasm-releaseOK704

Exports:bmddbmdd.nloptcsccacscca.CVDGP_OClindalinda.plotlinda.wald.test

Dependencies:backportsbbotkbootcheckmatecliclueclustercodetoolscpp11data.tabledigestdplyrevaluatefarverfBasicsforeachfuturefuture.applygenericsggplot2ggrepelglobalsgluegssgtableisobanditeratorslabelinglatticelgrlifecyclelistenvlme4lmerTestmagrittrMASSMatrixmatrixStatsminqamiraimlbenchmlr3mlr3mbomlr3measuresmlr3miscmlr3tuningmodeestmoocorenanonextnlmenloptrnumDerivpalmerpenguinsparadoxparallellypillarpkgconfigPRROCR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrlangrmutilrpartS7scalesspacefillrspatialstablestablediststatipstatmodtibbletidyselecttimeDatetimeSeriesutf8uuidvctrsviridisLitewithr