Package: MetaHD 0.1.4

Jayamini Liyanage

MetaHD: A Multivariate Meta-Analysis Model for High-Dimensional Data

Performs multivariate meta-analysis for high-dimensional data to integrate and collectively analyse individual-level data from multiple studies, as well as to combine summary estimates. This approach accounts for correlation between outcomes, incorporates within‑ and between‑study variability, handles missing values, and uses shrinkage estimation to accommodate high dimensionality. The 'MetaHD' R package provides access to our multivariate meta-analysis approach, along with a comprehensive suite of existing meta-analysis methods, including fixed-effects and random-effects models, Fisher’s method, Stouffer’s method, the weighted Z method, Lancaster’s method, the weighted Fisher’s method, and vote-counting approach. A detailed vignette with example datasets and code for data preparation and analysis is available at <https://alyshadelivera.github.io/MetaHD_vignette/>.

Authors:Jayamini Liyanage [aut, cre], Alysha De Livera [aut], Luke Prendergast [aut]

MetaHD_0.1.4.tar.gz
MetaHD_0.1.4.tar.gz(r-4.7-arm64)MetaHD_0.1.4.tar.gz(r-4.7-x86_64)MetaHD_0.1.4.tar.gz(r-4.6-arm64)MetaHD_0.1.4.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html
card.svg |card.png
MetaHD/json (API)

# Install 'MetaHD' in R:
install.packages('MetaHD', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
Datasets:
  • realdata - An Individual-Level Metabolomics Dataset
  • simdata.1 - Simulated Dataset 1 : With Complete Data
  • simdata.2 - Simulated Dataset 2 : With Data Missing-At-Random

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

openblascpp

1.00 score 185 downloads 3 exports 66 dependencies

Last updated from:ef70836819. Checks:5 OK, 1 FAIL. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64OK162
linux-devel-x86_64OK149
source / vignettesOK215
linux-release-arm64OK162
linux-release-x86_64OK184
wasm-releaseFAIL122

Exports:MetaHDMetaHDInputMetaHDpval

Dependencies:BiobaseBiocGenericsclicodetoolscorpcorcpp11DEoptimRdigestdplyrdynamicTreeCutfuturefuture.applygenericsglobalsgluelatticelifecyclelistenvmagrittrMASSmathjaxrMatrixmatrixcalcMatrixModelsmetadatmetaformetapmetapromnormtmultcompmulttestmutossmvtnormnlmenloptrnumDerivparallellypbapplypillarpkgconfigplotrixpurrrqqconfquantregR6rbibutilsRcppRcppArmadilloRdpackrlangrobustbasesandwichsnSparseMstringistringrsurvivalTFisherTH.datatibbletidyrtidyselectutf8vctrswithrzoo