Package: MetaHD 0.1.3

Jayamini Liyanage

MetaHD: A Multivariate Meta-Analysis Model for High-Dimensional Metabolomics Data

Performs multivariate meta-analysis for high-dimensional metabolomics data for integrating and collectively analysing individual-level data generated from multiple studies as well as for combining summary estimates. This approach accounts for correlation between outcomes, considers variability within and between studies, handles missing values and uses shrinkage estimation to allow for high dimensionality. A detailed vignette with example datasets and code to prepare data and analyses are available on <https://bookdown.org/a2delivera/MetaHD/>.

Authors:Jayamini Liyanage [aut, cre], Alysha De Livera [aut]

MetaHD_0.1.3.tar.gz
MetaHD_0.1.3.tar.gz(r-4.5-noble)MetaHD_0.1.3.tar.gz(r-4.4-noble)
MetaHD.pdf |MetaHD.html✨
MetaHD/json (API)

# Install 'MetaHD' in R:
install.packages('MetaHD', repos = 'https://cloud.r-project.org')
Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
Datasets:
  • realdata - An Individual-Level Metabolomics Dataset
  • simdata.1 - Simulated Dataset 1 : With Complete Data
  • simdata.2 - Simulated Dataset 2 : With Data Missing-At-Random

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

openblascpp

1.60 score 149 downloads 2 exports 35 dependencies

Last updated 6 months agofrom:95fb6b1d64. Checks:3 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 24 2025
R-4.5-linux-x86_64OKMar 24 2025
R-4.4-linux-x86_64OKMar 24 2025

Exports:MetaHDMetaHDInput

Dependencies:clicorpcorcpp11digestdplyrfansigenericsgluelatticelifecyclemagrittrmathjaxrMatrixmatrixcalcmetadatmetafornlmenloptrnumDerivpbapplypillarpkgconfigpurrrR6RcppRcppArmadillorlangstringistringrtibbletidyrtidyselectutf8vctrswithr

Citation

To cite package ‘MetaHD’ in publications use:

Liyanage J, De Livera A (2024). MetaHD: A Multivariate Meta-Analysis Model for High-Dimensional Metabolomics Data. R package version 0.1.3, https://CRAN.R-project.org/package=MetaHD.

Corresponding BibTeX entry: 

  @Manual{,
    title = {MetaHD: A Multivariate Meta-Analysis Model for
      High-Dimensional Metabolomics Data},
    author = {Jayamini Liyanage and Alysha {De Livera}},
    year = {2024},
    note = {R package version 0.1.3},
    url = {https://CRAN.R-project.org/package=MetaHD},
  }