Package: MINTplates 1.0.1

Shanliang Zhong

MINTplates: Encode "License-Plates" from Sequences and Decode Them Back

It can be used to create/encode molecular "license-plates" from sequences and to also decode the "license-plates" back to sequences. While initially created for transfer RNA-derived small fragments (tRFs), this tool can be used for any genomic sequences including but not limited to: tRFs, microRNAs, etc. The detailed information can reference to Pliatsika V, Loher P, Telonis AG, Rigoutsos I (2016) <doi:10.1093/bioinformatics/btw194>. It can also be used to annotate tRFs. The detailed information can reference to Loher P, Telonis AG, Rigoutsos I (2017) <doi:10.1038/srep41184>.

Authors:Shanliang Zhong [aut, cre]

MINTplates_1.0.1.tar.gz
MINTplates_1.0.1.tar.gz(r-4.5-noble)MINTplates_1.0.1.tar.gz(r-4.4-noble)
MINTplates_1.0.1.tgz(r-4.4-emscripten)MINTplates_1.0.1.tgz(r-4.3-emscripten)
MINTplates.pdf |MINTplates.html
MINTplates/json (API)

# Install 'MINTplates' in R:
install.packages('MINTplates', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 141 downloads 7 exports 0 dependencies

Last updated 3 years agofrom:66f099edd6. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 01 2024
R-4.5-linuxOKNov 01 2024

Exports:annotate_tRFdeseqsenseqsexclusivesource_tRNAsource_tRNA2tRFtype

Dependencies: