Package: MINTplates 1.0.1
Shanliang Zhong
MINTplates: Encode "License-Plates" from Sequences and Decode Them Back
It can be used to create/encode molecular "license-plates" from sequences and to also decode the "license-plates" back to sequences. While initially created for transfer RNA-derived small fragments (tRFs), this tool can be used for any genomic sequences including but not limited to: tRFs, microRNAs, etc. The detailed information can reference to Pliatsika V, Loher P, Telonis AG, Rigoutsos I (2016) <doi:10.1093/bioinformatics/btw194>. It can also be used to annotate tRFs. The detailed information can reference to Loher P, Telonis AG, Rigoutsos I (2017) <doi:10.1038/srep41184>.
Authors:
MINTplates_1.0.1.tar.gz
MINTplates_1.0.1.tar.gz(r-4.5-noble)MINTplates_1.0.1.tar.gz(r-4.4-noble)
MINTplates_1.0.1.tgz(r-4.4-emscripten)MINTplates_1.0.1.tgz(r-4.3-emscripten)
MINTplates.pdf |MINTplates.html✨
MINTplates/json (API)
| # Install 'MINTplates' in R: |
| install.packages('MINTplates', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:66f099edd6. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 01 2024 |
| R-4.5-linux | OK | Dec 01 2024 |
Exports:annotate_tRFdeseqsenseqsexclusivesource_tRNAsource_tRNA2tRFtype
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Annotate a tRF sequence | annotate_tRF |
| Decode license-plates | deseqs |
| Encode sequences | enseqs |
| Determine whether the tRFs are exclusive to tRNA space | exclusive |
| Obtain the tRNA source of a tRF | source_tRNA |
| Obtain the tRNA sources of tRFs | source_tRNA2 |
| Obtain the type of tRFs | tRFtype |