Package: MDSMap 1.1
Bram Boskamp
MDSMap: High Density Genetic Linkage Mapping using Multidimensional Scaling
Estimate genetic linkage maps for markers on a single chromosome (or in a single linkage group) from pairwise recombination fractions or intermarker distances using weighted metric multidimensional scaling. The methods are suitable for autotetraploid as well as diploid populations. Options for assessing the fit to a known map are also provided. Methods are discussed in detail in Preedy and Hackett (2016) <doi:10.1007/s00122-016-2761-8>.
Authors:
MDSMap_1.1.tar.gz
MDSMap_1.1.tar.gz(r-4.5-noble)MDSMap_1.1.tar.gz(r-4.4-noble)
MDSMap_1.1.tgz(r-4.4-emscripten)MDSMap_1.1.tgz(r-4.3-emscripten)
MDSMap.pdf |MDSMap.html✨
MDSMap/json (API)
# Install 'MDSMap' in R: |
install.packages('MDSMap', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 6 years agofrom:84bd9e176e. Checks:OK: 1 NOTE: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 09 2024 |
R-4.5-linux | NOTE | Dec 09 2024 |
Exports:calc.maps.pccalc.maps.spherecalc.nnfitcalc.nnfit.from.filecalc.nnfit.locicalc.nswapscalc.pair.rf.lodconvert.polardmapdmap.checkestimate.mapget.dist.lociget.nearest.informativeinvert.mapmap.to.intervalmeandist.from.truthrecalc.nnfit.from.mapsim.bc.rflod.file
Dependencies:backportsbase64encbitbit64bootbroombslibcachemcheckmateclassclicliprclustercodetoolscolorspacecpp11crayondata.tabledigestdoParalleldplyre1071ellipseevaluatefansifarverfastmapfontawesomeforcatsforeachforeignFormulafsgdatagenericsggplot2glmnetgluegridExtragtablegtoolshavenhighrHmischmshtmlTablehtmltoolshtmlwidgetsisobanditeratorsjomojquerylibjsonliteknitrlabelinglatticelifecyclelme4magrittrMASSMatrixmemoisemgcvmicemimeminqamitmlmunsellnlmenloptrnnetnnlsnumDerivordinalpanpillarpkgconfigplotrixplyrpolynomprettyunitsprincurveprogressproxypurrrR6rappdirsRColorBrewerRcppRcppEigenreadrreshaperglrlangrmarkdownrpartrstudioapisassscalesshapesmacofstringistringrsurvivaltibbletidyrtidyselecttinytextzdbucminfutf8vctrsviridisviridisLitevroomweightswithrwordcloudxfunyaml