Package: MCPAN 1.1-21

Frank Schaarschmidt

MCPAN: Multiple Comparisons Using Normal Approximation

Multiple contrast tests and simultaneous confidence intervals based on normal approximation. With implementations for binomial proportions in a 2xk setting (risk difference and odds ratio), poly-3-adjusted tumour rates, biodiversity indices (multinomial data) and expected values under lognormal assumption. Approximative power calculation for multiple contrast tests of binomial and Gaussian data.

Authors:Frank Schaarschmidt [aut, cre], Daniel Gerhard [aut], Martin Sill [aut]

MCPAN_1.1-21.tar.gz
MCPAN_1.1-21.tar.gz(r-4.5-noble)MCPAN_1.1-21.tar.gz(r-4.4-noble)
MCPAN_1.1-21.tgz(r-4.4-emscripten)MCPAN_1.1-21.tgz(r-4.3-emscripten)
MCPAN.pdf |MCPAN.html✨
MCPAN/json (API)

# Install 'MCPAN' in R:
install.packages('MCPAN', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • HCD - Hell Creek Dinosaur Data
  • bronch - Rodent bronchial carcinoma data
  • liarozole - Marked improvement of psoriasis after application of liarozole
  • methyl - NTP bioassay data: effect of methyleugenol on skin fibroma

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

60 exports 1 stars 1.24 score 20 dependencies 3 dependents 1 mentions 38 scripts 408 downloads

Last updated 6 years agofrom:dcfedcf90a. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 22 2024
R-4.5-linuxOKAug 22 2024

Exports:binomestbinomest.defaultbinomest.formulabinomest.tablebinomORcibinomORci.defaultbinomORci.formulabinomORci.matrixbinomORci.tablebinomRDcibinomRDci.defaultbinomRDci.formulabinomRDci.matrixbinomRDci.tablebinomRDtestbinomRDtest.defaultbinomRDtest.formulabinomRDtest.matrixbinomRDtest.tablebinomRRcibinomRRci.defaultbinomRRci.formulabinomRRci.matrixbinomRRci.tablecenssamplecenssamplefcorrMatgenestShannonestShannonfestSimpsonestSimpsonflndcilndestlnrcilnrestmosaicdivmultinomORciplotCIplotCI.confint.glhtplotCI.defaultplotCI.sciplotCI.sci.ratioplotCIIpoly3cipoly3estpoly3estfpoly3tablepoly3testpowerbinompowerbinomORpowermcpnpowermcptPQlnSCSrankShannonShannonciSimpsonSimpsonciWaldciWaldtest

Dependencies:abindcodacodetoolslatticemagicMASSMatrixMatrixModelsmcmcMCMCpackmultcompmvtnormplyrquantregRcppsandwichSparseMsurvivalTH.datazoo

Readme and manuals

Help Manual

Help pageTopics
Multiple comparison procedures based on normal approximation and extensions.MCPAN-package MCPAN
Simultaneous confidence intervals for odds ratiosbinomORci binomORci.default binomORci.formula binomORci.matrix binomORci.table
Simultaneous confidence intervals for contrasts of independent binomial proportions (in a oneway layout)binomRDci binomRDci.default binomRDci.formula binomRDci.matrix binomRDci.table
Simultaneous test for contrasts of independent binomial proportions (in a oneway layout)binomRDtest binomRDtest.default binomRDtest.formula binomRDtest.matrix binomRDtest.table
Simultaneous confidence intervals for ratios of independent binomial proportionsbinomRRci binomRRci.default binomRRci.formula binomRRci.matrix binomRRci.table
Rodent bronchial carcinoma databronch
Random data for Poly-kcenssample
Random data for Poly-kcenssamplef
A function to calculate the correlation matrixcorrMatgen
Estimate the Shannon IndexestShannon
Estimate the Shannon-Wiener indexestShannonf
Simpson indexestSimpson
Estimate the Simpson index from several samplesestSimpsonf
Hell Creek Dinosaur DataHCD
Marked improvement of psoriasis after application of liarozoleliarozole
Simultaneous confidence intervals for expected values assuming lognormal distribution.lndci lnrci
NTP bioassay data: effect of methyleugenol on skin fibromamethyl
Mosaicplot for the data in Shannonci and Simpsoncimosaicdiv
Simultaneous confidence intervals for odds ratios comparing multiple odds and multiple treatments in a contingency tablemultinomORci
Plot confidence intervalsplot.binomORci plot.binomRDci plot.binomRRci plot.poly3ci plot.sci plot.Shannonci plot.Simpsonci
Plot confidence intervalsplotCI plotCI.confint.glht plotCI.default plotCI.sci plotCI.sci.ratio
Plot confidence intervalsplotCII
Simultaneous confidence intervals for contrasts of poly-3-adjusted tumour ratespoly3ci
Only for internal use.poly3est
Only for internal use.poly3estf
Summarize long term carcinogenicity datapoly3table
Approximate simultaneous test for poly-3-adjusted tumour ratespoly3test
Approximate power for multiple contrast tests of binomial proportions.powerbinom powerbinomOR
Approximative power calculation for multiple contrast testspowermcpn
Testversion. Power calculation for multiple contrast tests (1-way ANOVA model)powermcpt
Print out put of multinomORcias.data.frame.multinomORci print.multinomORci
Print methods for the classes in this packageprint.binomORci print.binomRDci print.binomRDtest print.binomRRci print.poly3ci print.poly3est print.poly3test print.Shannonci print.Simpsonci
Compute a rectangular simultaneous confidence set from a sample of a joint empirical distribution.SCSrank
Confidence intervals for multiple contrasts of Shannon indicesShannonci
Confidence intervals for differences of Simpson indicesSimpsonci
Detailed print out for binomORcisummary.binomORci
Detailed print out for binomRDcisummary.binomRDci
Detailed print out for binomRDtestsummary.binomRDtest
Detailed print out for binomRRcisummary.binomRRci
Detailed print out for poly3estsummary.poly3est
Summary for Shannoncisummary.Shannonci
Summary function for Simpsoncisummary.Simpsonci
Simultaneous Wald confidence intervalsWaldci
Simultaneous Wald testsWaldtest