Package: MBHdesign 2.3.15

Scott Foster
MBHdesign: Spatial Designs for Ecological and Environmental Surveys
Provides spatially survey balanced designs using the quasi-random number method described Robinson et al. (2013) <doi:10.1111/biom.12059> and adjusted in Robinson et al. (2017) <doi:10.1016/j.spl.2017.05.004>. Designs using MBHdesign can: 1) accommodate, without substantial detrimental effects on spatial balance, legacy sites (Foster et al., 2017 <doi:10.1111/2041-210X.12782>); 2) be based on points or transects (foster et al. 2020 <doi:10.1111/2041-210X.13321> and produce clustered samples (Foster et al. (in press). Additional information about the package use itself is given in Foster (2021) <doi:10.1111/2041-210X.13535>.
Authors:
MBHdesign_2.3.15.tar.gz
MBHdesign_2.3.15.tar.gz(r-4.5-noble)MBHdesign_2.3.15.tar.gz(r-4.4-noble)
MBHdesign_2.3.15.tgz(r-4.4-emscripten)MBHdesign_2.3.15.tgz(r-4.3-emscripten)
MBHdesign.pdf |MBHdesign.html✨
MBHdesign/json (API)
NEWS
# Install 'MBHdesign' in R: |
install.packages('MBHdesign', repos = 'https://cloud.r-project.org') |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:f0ef289778. Checks:1 OK, 2 NOTE. Indexed: yes.
Target | Result | Latest binary |
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Doc / Vignettes | OK | Mar 30 2025 |
R-4.5-linux | NOTE | Mar 30 2025 |
R-4.4-linux | NOTE | Mar 30 2025 |
Exports:alterInclProbsalterInclProbs.clusterfindDescendingTransfindTransFromPointmodEstiquasiSampquasiSamp.clusterquasiSamp.rastertransectSamp
Dependencies:abindclassgeometrylatticelinproglpSolvemagicMASSMatrixmgcvmvtnormnlmerandtoolboxRcppRcppProgressrngWELLterra
Citation
To cite the MBHdesign package in publications please use one (or more) of the following. For citing the package please use the first paper. For citing the methods that the package implements, please cite the appropriate paper(s) from the last three papers.
Foster, S. D. MBHdesign: An R-package for efficient spatial survey designs Methods in Ecology and Evolution, 2021, 12, 415-420
Robertson, B. L.; Brown, J. A.; McDonald, T. & Jaksons, P. BAS: Balanced Acceptance Sampling of Natural Resources. Biometrics, 2013, 69, 776-784
Foster, S.D., Hosack, G.R., Lawrence, E., Przeslawski, R., Hedge, P., Caley, M.J., Barrett, N.S., Li, J., Lynch, T. Dambacher, J.M., Sweatman, H.P.A. and Hayes, K.R. Flexible Spatially-Balanced Designs that Incorprorate Legacy Sites. Methods in Ecology and Evolution, 2017, 8, 1433-1442
Foster, S.D., Hosack, G.R., J. Monk, Lawrence, E., Barrett, N.S., Williams, A. and Przeslawski, P. Spatially-Balanced Designs for Transect-Based Surveys. Methods in Ecology and Evolution (2020)
Foster, S.D., Lawrence, E. and Hoskins, A. Spatially-Clustered Survey Designs. Journal of Agricultural, Biological and Environmental Statistics (in press)
Corresponding BibTeX entries:
@Article{, title = {MBHdesign: An R-package for efficient spatial survey designs}, author = {S.D. Foster}, year = {2021}, journal = {Methods in Ecology and Evolution}, volume = {12}, pages = {415-420}, }
@Article{, title = {BAS: Balanced Acceptance Sampling of Natural Resources}, author = {{Robertson} and {B.L.} and {Brown} and {J.A.} and {McDonald} and {T.} and {Jacksons} and {P.}}, year = {2013}, journal = {Biometrics}, volume = {69}, pages = {776-784}, }
@Article{, title = {Flexible Spatially-Balanced Designs that Incorporate Legacy Sites}, author = {S.D. Foster and G.R. Hosack and E. Lawrence and R. Przeslawski and P. Hedge and M.J. Caley and N.S. Barrett and J. Li and T. Lynch and J.M. Dambacher and H.P.A. Sweatman and {K.R.Hayes}}, year = {2017}, journal = {Methods in Ecology and Evolution}, volume = {8}, pages = {1433-1442}, }
@Article{, title = {Spatially-Balanced Designs for Transect-Based Surveys}, author = {S.D. Foster and G.R. Hosack and J. Monk and E. Lawrence and N.S. Barrett and A. Williams and R. Przeslawski}, year = {2020}, journal = {Methods in Ecology and Evolution}, volume = {11}, pages = {95-105}, }
@Article{, title = {Spatially-Clustered Survey Designs}, author = {S.D. Foster and E. Lawrence and A. Hoskins}, year = {in press}, journal = {Journal of Agricultural, Biological and Environmental Statistics}, }
Readme and manuals
Help Manual
Help page | Topics |
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Alters inclusion probabilities to accommodate legacy sites | alterInclProbs |
Alters inclusion probabilities to accommodate a 2-stage cluster sampling process | alterInclProbs.cluster |
Finds transects that are descending over complex terrain, or are stemming from a set of locations. | findDescendingTrans findTransFromPoint |
Get a model-based estimate of mean of a sampled area | modEsti |
Generates a spatial design using Quasi-random numbers | quasiSamp quasiSamp.cluster quasiSamp.raster |
Generates a spatial design for transects | transectSamp transectSamp.internal |