Package: MAGEE 1.4.5

Han Chen

MAGEE: Mixed Model Association Test for GEne-Environment Interaction

Use a 'glmmkin' class object (GMMAT package) from the null model to perform generalized linear mixed model-based single-variant and variant set main effect tests, gene-environment interaction tests, and joint tests for association, as proposed in Wang et al. (2020) <doi:10.1002/gepi.22351>.

Authors:Xinyu Wang [aut], Han Chen [aut, cre], Duy Pham [aut], Kenneth Westerman [ctb], Cong Pan [aut], Eric Biggers [ctb, cph], Tino Reichardt [ctb, cph], Meta Platforms, Inc. and affiliates [cph]

MAGEE_1.4.5.tar.gz
MAGEE_1.4.5.tar.gz(r-4.7-arm64)MAGEE_1.4.5.tar.gz(r-4.7-x86_64)MAGEE_1.4.5.tar.gz(r-4.6-arm64)MAGEE_1.4.5.tar.gz(r-4.6-x86_64)
MAGEE_1.4.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MAGEE/json (API)

# Install 'MAGEE' in R:
install.packages('MAGEE', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • openblas– Optimized BLAS
  • libzstd– Fast lossless compression algorithm
  • libdeflate– Fast, whole-buffer DEFLATE-based compression and decompression
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

openblaslibzstdlibdeflatecpp

2.78 score 10 scripts 267 downloads 2 mentions 6 exports 11 dependencies

Last updated from:afd366e9ec. Checks:4 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE188
linux-devel-x86_64NOTE232
source / vignettesOK248
linux-release-arm64NOTE212
linux-release-x86_64NOTE231
wasm-releaseOK137

Exports:glmm.geiglmm.gei.metaMAGEEMAGEE.lowmemMAGEE.metaMAGEE.prep

Dependencies:codetoolsCompQuadFormdata.tableforeachGMMATiteratorslatticeMASSMatrixRcppRcppArmadillo

MAGEE

Rendered fromMAGEE.Rnwusingutils::Sweaveon Jun 13 2026.

Last update: 2026-02-12
Started: 2021-05-10