Package: LoopRig 0.1.1

Hassaan Maan

LoopRig: Integration and Analysis of Chromatin Loop Data

Common coordinate-based workflows involving processed chromatin loop and genomic element data are considered and packaged into appropriate customizable functions. Includes methods for linking element sets via chromatin loops and creating consensus loop datasets.

Authors:Hassaan Maan [aut, cre]

LoopRig_0.1.1.tar.gz
LoopRig_0.1.1.tar.gz(r-4.5-noble)LoopRig_0.1.1.tar.gz(r-4.4-noble)
LoopRig_0.1.1.tgz(r-4.4-emscripten)LoopRig_0.1.1.tgz(r-4.3-emscripten)
LoopRig.pdf |LoopRig.html✨
LoopRig/json (API)
NEWS

# Install 'LoopRig' in R:
install.packages('LoopRig', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

8 exports 0.00 score 17 dependencies 18 scripts 133 downloads

Last updated 5 years agofrom:0c320a770f. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 12 2024
R-4.5-linuxOKSep 12 2024

Exports:ConsensusLoopsDropLoopsElementsToRangesExportBEDLinkedElementsLoopsToRangesScaffoldElementsStackedElements

Dependencies:askpassBiocGenericscurlGenomeInfoDbGenomeInfoDbDataGenomicRangeshttrIRangesjsonlitemimeopensslR6S4VectorssysUCSC.utilsXVectorzlibbioc

LoopRig Tutorial: Enhancer-Promoter Interactions

Rendered fromLoopRig-Tutorial.Rmdusingknitr::rmarkdownon Sep 12 2024.

Last update: 2019-12-20
Started: 2019-12-20