Package: LatentBMA 0.1.1

Gregor Zens

LatentBMA: Bayesian Model Averaging for Univariate Link Latent Gaussian Models

Bayesian model averaging (BMA) algorithms for univariate link latent Gaussian models (ULLGMs). For detailed information, refer to Steel M.F.J. & Zens G. (2024) "Model Uncertainty in Latent Gaussian Models with Univariate Link Function" <doi:10.48550/arXiv.2406.17318>. The package supports various g-priors and a beta-binomial prior on the model space. It also includes auxiliary functions for visualizing and tabulating BMA results. Currently, it offers an out-of-the-box solution for model averaging of Poisson log-normal (PLN) and binomial logistic-normal (BiL) models. The codebase is designed to be easily extendable to other likelihoods, priors, and link functions.

Authors:Gregor Zens [aut, cre], Mark F.J. Steel [aut]

LatentBMA_0.1.1.tar.gz
LatentBMA_0.1.1.tar.gz(r-4.5-noble)LatentBMA_0.1.1.tar.gz(r-4.4-noble)
LatentBMA_0.1.1.tgz(r-4.4-emscripten)LatentBMA_0.1.1.tgz(r-4.3-emscripten)
LatentBMA.pdf |LatentBMA.html✨
LatentBMA/json (API)

# Install 'LatentBMA' in R:
install.packages('LatentBMA', repos = 'https://cloud.r-project.org')

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.30 score 182 downloads 7 exports 43 dependencies

Last updated 9 months agofrom:0f36cc5522. Checks:3 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 29 2025
R-4.5-linuxOKMar 29 2025
R-4.4-linuxOKMar 29 2025

Exports:plotBetaplotModelSizeplotPIPsummaryBMAtopModelstracePlotULLGM_BMA

Dependencies:clicolorspacecrayonevaluatefansifarverggplot2gluegtablehighrhmsisobandknitrlabelinglatticelifecyclemagrittrMASSMatrixmgcvmnormtmunsellnlmepillarpkgconfigplyrprettyunitsprogressR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbleutf8vctrsviridisLitewithrxfunyaml

Bayesian Model Averaging with 'LatentBMA'

G. Zens

Rendered fromLatentBMA_Vignette.Rmdusingknitr::rmarkdownon Mar 29 2025.

Last update: 2024-06-28
Started: 2024-06-28

Citation

Steel MF, Zens G (2024). “Model Uncertainty in Latent Gaussian Models with Univariate Link Function.” arXiv Report. doi:10.48550/arXiv.2406.17318.

Corresponding BibTeX entry: 

  @Article{,
    title = {Model Uncertainty in Latent Gaussian Models with
      Univariate Link Function},
    author = {Mark F.J. Steel and Gregor Zens},
    year = {2024},
    journal = {arXiv Report},
    doi = {10.48550/arXiv.2406.17318},
  }