Package: LTASR 0.1.4
Stephen Bertke
LTASR: Functions to Replicate the Center for Disease Control and Prevention's 'LTAS' Software in R
A suite of functions for reading in a rate file in XML format, stratify a cohort, and calculate 'SMRs' from the stratified cohort and rate file.
Authors:
LTASR_0.1.4.tar.gz
LTASR_0.1.4.tar.gz(r-4.5-noble)LTASR_0.1.4.tar.gz(r-4.4-noble)
LTASR_0.1.4.tgz(r-4.4-emscripten)LTASR_0.1.4.tgz(r-4.3-emscripten)
LTASR.pdf |LTASR.html✨
LTASR/json (API)
NEWS
# Install 'LTASR' in R: |
install.packages('LTASR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- history_example - Example History File for Testing
- person_example - Example Person File for Testing
- us_119ucod_19602021 - 119 UCOD U.S. Death Rate, 1960-2021
- us_119ucod_recent - 119 UCOD U.S. Death Rate, 1960-2022
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 months agofrom:bf87377ea0. Checks:OK: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 21 2024 |
R-4.5-linux | OK | Nov 21 2024 |
Exports:%>%checkStrataexp_strataexpand_datesget_tableget_table_historyget_table_history_estmapDeathsparseRatesmr_customsmr_majorsmr_minor
Dependencies:bitbit64clicliprcpp11crayondplyrevaluatefansigenericsgluehighrhmsknitrlatticelifecyclelubridatemagrittrpillarpkgconfigprettyunitsprogresspurrrR6readrrlangstringistringrtibbletidyrtidyselecttimechangetzdbutf8vctrsvroomwithrxfunXMLyamlzoo
Demo for basic stratification
Rendered fromBasicStrata.Rmd
usingknitr::rmarkdown
on Nov 21 2024.Last update: 2024-08-23
Started: 2022-04-13
History File Stratification
Rendered fromHistFile.Rmd
usingknitr::rmarkdown
on Nov 21 2024.Last update: 2024-08-23
Started: 2022-10-21
Minors119
Rendered fromMinors119.pdf.asis
usingR.rsp::asis
on Nov 21 2024.Last update: 2024-03-28
Started: 2024-03-28
SMRbyStrata
Rendered fromSMRbyStrata.Rmd
usingknitr::rmarkdown
on Nov 21 2024.Last update: 2024-08-23
Started: 2022-10-21
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Checks all strata in py_table are contained in rate file | checkStrata |
Create exp_strata object | exp_strata |
Expand data through range of date values | expand_dates |
Stratify Person Table | get_table |
Stratify Person Table with Time Varying Co-variate | get_table_history |
Stratify Person Table with Time Varying Co-variate | get_table_history_est |
Example History File for Testing | history_example |
Map ICD codes to grouped minors | mapDeaths |
Parses LTAS rate file in .xml format | parseRate |
Example Person File for Testing | person_example |
Calculate SMRs for Custom minor groupings | smr_custom |
Calculate SMRs for Major groupings | smr_major |
Calculate SMRs for Minors | smr_minor |
119 UCOD U.S. Death Rate, 1960-2021 | us_119ucod_19602021 |
119 UCOD U.S. Death Rate, 1960-2022 | us_119ucod_recent |