Package: LTASR 0.1.4

Stephen Bertke
LTASR: Functions to Replicate the Center for Disease Control and Prevention's 'LTAS' Software in R
A suite of functions for reading in a rate file in XML format, stratify a cohort, and calculate 'SMRs' from the stratified cohort and rate file.
Authors:
LTASR_0.1.4.tar.gz
LTASR_0.1.4.tar.gz(r-4.7-any)LTASR_0.1.4.tar.gz(r-4.6-any)
LTASR_0.1.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
LTASR/json (API)
| # Install 'LTASR' in R: |
| install.packages('LTASR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- history_example - Example History File for Testing
- person_example - Example Person File for Testing
- us_119ucod_19602021 - 119 UCOD U.S. Death Rate, 1960-2021
- us_119ucod_recent - 119 UCOD U.S. Death Rate, 1960-2022
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:bf87377ea0. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 131 | ||
| source / vignettes | OK | 211 | ||
| linux-release-x86_64 | OK | 143 | ||
| wasm-release | OK | 135 |
Exports:%>%checkStrataexp_strataexpand_datesget_tableget_table_historyget_table_history_estmapDeathsparseRatesmr_customsmr_majorsmr_minor
Dependencies:bitbit64clicliprcpp11crayondplyrevaluategenericsgluehighrhmsknitrlatticelifecyclelubridatemagrittrpillarpkgconfigprettyunitsprogresspurrrR6readrrlangstringistringrtibbletidyrtidyselecttimechangetzdbutf8vctrsvroomwithrxfunXMLyamlzoo
Last update: 2024-08-23
Started: 2022-04-13
Last update: 2024-08-23
Started: 2022-10-21
Last update: 2024-08-23
Started: 2022-10-21
Last update: 2024-03-28
Started: 2024-03-28
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Checks all strata in py_table are contained in rate file | checkStrata |
| Create exp_strata object | exp_strata |
| Expand data through range of date values | expand_dates |
| Stratify Person Table | get_table |
| Stratify Person Table with Time Varying Co-variate | get_table_history |
| Stratify Person Table with Time Varying Co-variate | get_table_history_est |
| Example History File for Testing | history_example |
| Map ICD codes to grouped minors | mapDeaths |
| Parses LTAS rate file in .xml format | parseRate |
| Example Person File for Testing | person_example |
| Calculate SMRs for Custom minor groupings | smr_custom |
| Calculate SMRs for Major groupings | smr_major |
| Calculate SMRs for Minors | smr_minor |
| 119 UCOD U.S. Death Rate, 1960-2021 | us_119ucod_19602021 |
| 119 UCOD U.S. Death Rate, 1960-2022 | us_119ucod_recent |